barSeed - Barley Seed Development Database

Probe CUST_6723_PI390587928

Source Contig U35_14558

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6723_PI390587928	Hv_44K_v2	TGCCTCGGCGACGTATGAACTATCCTGTTTTCCTTTGCATTATCTATCTAGATCTAGGCA	1578	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.237	1.165	1.243	0.927	0.369	0.409
Raw	26994.633	39158.500	37311.667	43244.900	6090.847	7439.477

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357003	1753	2e-24	1580 - 1639	100	60 / 60	plus	ABC01791 ABC01794 ABC47129
MLOC	MLOC_80737.2	1399	7e-23	1117 - 1176	98	59 / 60	plus	ABC01791 ABC01794 ABC47129
JLOC1	JLOC1_53755.1	1752	4e-23	1117 - 1176	98	59 / 60	plus
Harvest21	ABC01793	682	3e-25	205 - 264	100	60 / 60	minus
Harvest21	ABC01794	1852	1e-23	1571 - 1630	98	59 / 60	plus	ABC01794
Harvest35	U35_14558	1859	3e-25	1579 - 1638	100	60 / 60	plus

Contig Sequence (1859 bp)

>U35_14558 1859 Hv_44K_v2
ATCGCCGCCTCCTCTCTCTCACCACTCCTCGCCAGATCCAATCCACCAACCTTCCCCATG
GCGCTCTCCGTGGAGAAGACCTCCTCCGGCCGGGAGTACAAGGTCAAGGACCTCTCCCAG
GCCGACTTCGGCCGCCTCGAGCTGGAGCTCGCCGAGGTCGAGATGCCCGGCCTCATGGCC
TGCCGCGCCGAGTTCGGCCCCTCGCAGCCCTTCAAGGGCGCCCGGATCTCCGGCTCCCTC
CACATGACCATCCAGACCGCCGTGCTCATCGAGACCCTCACCGCCCTCGGCGCCGAGGTC
CGCTGGTGCTCCTGCAACATCTTCTCCACCCAGGACCACGCCGCCGCCGCCATCGCGCGC
GACTCGGCCGCCGTCTTCGCCTGGAAGGGCGAGACGCTCGAGGAATACTGGTGGTGCACC
GAGCGCTGCCTCGACTGGGGCGCCGGCGGCGGCCCCGACCTCATCGTCGACGACGGCGGC
GACGCCACCCTGCTCATCCACGAGGGCGTCAAGGCCGAGGAGGAGTTCGAGAAGTCGGGC
AAGGTCCCCGACCCAGAGTCCACCGATAACCCCGAGTTCAAGATCGTCCTCACCATCATC
CGCGACGGGCTCAAGACCGACGCCCGCAAGTACCGCAAGATGAAGGAGAGGCTCGTCGGC
GTCTCCGAGGAGACCACCACCGGCGTCAAGAGGCTGTACCAGATGCAGGAGTCCGGCACC
CTCCTCTTCCCTGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGTTTGACAACCTT
TATGGTTGCCGTCACTCGCTCCCTGATGGTCTCATGAGGGCCACTGATGTTATGATCGCC
GGCAAGGTTGCTGTGGTCTGCGGTTATGGTGATGTTGGCAAGGGCTGTGCCGCCGCACTC
AAGCAGGCTGGTGCCCGTGTGATCGTGACAGAGATTGACCCCATCTGTGCCCTTCAGGCC
CTGATGGAGGGCATCCAGATCCTCACATTGGAGGATGTTGTCTCTGATGCCGACATCTTT
GTGACCACCACTGGAAACAAGGACATCATCATGGTTGACCACATGAGGAAGATGAAGAAC
AATGCCATTGTCTGCAACATTGGTCACTTTGACAACGAGATCGACATGAATGGCCTTGAG
ACCTACCCTGGTGTCAAGCGCATCACCATCAAGCCTCAGACTGATCGTTGGGTCTTCCCT
GAGACCAACACTGGCATTATTGTTCTTGCTGAGGGGCGTCTGATGAACCTTGGCTGTGCC
ACTGGCCACCCCAGCTTTGTCATGTCCTGCTCATTCACTAACCAGGTTATTGCCCAGCTT
GAGTTGTGGAAGGAGAAGGCCACCGGCAAGTACGAGAAGAAGGTGTACGTTCTCCCCAAG
CACCTTGATGAGAAGGTCGCGGCCCTCCACCTGGGCAAGCTCGGTGCCAGGCTGACCAAG
CTCACCAAGGCCCAGTCCGAGTACATTAGCATCCCAGTTGAGGGTCCCTACAAGCCGTCT
GCCTACCGGTACTAGTGCGTCCACTCCAGCACGACTAGCGGCTGGGCTGAGCCTGAGCAG
GCGCACCGACGGGAACTCTGCCTCGGCGACGTATGAACTATCCTGTTTTCCTTTGCATTA
TCTATCTAGATCTAGGCATGTTGTCTCTTAGGTGGAGGATTTGTCATGGTTACGTTTTTA
GACCGGTTAGGGTTGGTTGACGGAGGTGGCGTTTGCTTTTGCCCAGAAATAATTGCGTTA
TTATTTTGGTTTAAACGAGAGTGTGATTTGCCGGTTTTGTCCAATAAAAAAAAAATTTTA
CATGTCTGATGCTCCCTCCATCGATTGCAATCTCTTGCGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14558 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g26850.2	451	protein\|erythronate-4-phosphate dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi4g19457.1	456
Arabidopsis v10	AT4G13940.1	485	\| Symbols: HOG1, EMB1395, SAHH1, MEE58, ATSAHH1 \| S-adenosyl-L-homocysteine hydrolase \| chr4:8054931-8056676 FORWARD LENGTH=485