barSeed - Barley Seed Development Database

Probe CUST_6722_PI390587928

Source Contig U35_14559

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6722_PI390587928	Hv_44K_v2	TTATGTTTTGAGCCTTGTGAGGGTTGGGAGAGGCTGCGTTTGCTTTTGCCCAGAAATAAT	1692	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.117	1.892	1.310	0.545	0.154	0.162
Raw	104226.800	138198.600	87535.967	57475.400	5724.277	6628.933

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253091.1	1845	2e-24	1680 - 1739	100	60 / 60	plus	ABC01790 ABC01791 ABC01794 ABC46857
JLOC1	JLOC1_48850.1	1558	8e-25	1002 - 1061	100	60 / 60	plus
Harvest21	ABC01791	1804	3e-25	1675 - 1734	100	60 / 60	plus	ABC01791
Harvest21	ABC01790	642	3e-25	69 - 128	100	60 / 60	plus	ABC01790
Harvest21	ABC39117	105	2e-21	19 - 74	98	55 / 56	minus
Harvest35	U35_14559	1879	3e-25	1693 - 1752	100	60 / 60	plus

Contig Sequence (1879 bp)

>U35_14559 1879 Hv_44K_v2
TGGCCTAGTGGATCGCCGCCTCCACTCCTCCCTCCCTCCCAATCACTCTTCTTCCTCCTC
CGCCAGATCCGATCCACCAACCTTCTCCATGGCGCTCTCCGTGGAGAAGACCTCGTCTGG
CCGGGAGTACAAGGTCAAGGACCTCTCCCAGGCCGACTTCGGCCGCCTCGAGCTCGAGCT
GGCCGAGGTCGAGATGCCCGGCCTCATGGCCTGCCGCACCGAGTTCGGCCCCTCGCAGCC
CTTCAAGGGCGCCCGGATCTCCGGCTCCCTCCACATGACCATCCAGACCGCCGTGCTCAT
CGAGACCCTCACCGCCCTCGGCGCCGAGGTCCGCTGGTGCTCCTGCAACATCTTCTCCAC
CCAGGACCACGCCGCCGCCGCCATCGCCCGCGACTCGGCCGCCGTCTTCGCCTGGAAGGG
CGAGACCCTCGAGGAGTACTGGTGGTGCACCGAGCGCTGCCTCGACTGGGGCGCCGGCGG
CGGCCCCGACCTCATCGTCGACGACGGCGGCGACGCCACGCTGCTCATCCACGAGGGCGT
CAAGGCCGAGGAGGAGTTCGAGAAGTCCGGCAAGGTCCCCGACCCGGAGTCCACCGACAA
CCCCGAGTTCAAGATCGTCCTCACCATCATCCGCGACGGCCTCAAGACCGACGCCAGCAA
GTACCGCAAGATGAAGGAGAGGCTCGTCGGTGTCTCCGAGGAGACCACCACCGGCGTCAA
GAGGCTCTACCAGATGCAGGAGTCCGGCACCCTCCTTTTCCCCGCCATCAACGTCAACGA
CTCCGTCACCAAGAGCAAGTTTGACAACCTTTACGGTTGCCGTCACTCTCTCCCTGACGG
TCTCATGAGGGCCACTGATGTTATGATTGCCGGTAAGGTCGCCGTGGTCTGCGGTTATGG
TGATGTTGGCAAGGGCTGTGCCGCCGCACTCAAGCAGGCTGGTGCCCGTGTGATCGTGAC
AGAGATCGACCCCATCTGTGCTCTTCAGGCCCTGATGGAGGGCATCCAGATCCTCACCTT
GGAGGATGTTGTCTCTGAGGCTGATATCTTTGTGACCACCACCGGAAACAAGGACATCAT
CATGGTTGACCACATGAGGAAGATGAAGAACAACGCCATTGTCTGCAACATTGGTCACTT
TGACAACGAGATCGACATGAACGGCCTTGAGACCTACCCCGGTGTCAAGCGCATCACCAT
CAAGCCCCAGACTGACCGCTGGGTCTTCCCTGAGACCAAGACCGGCATCATTGTTCTTGC
TGAGGGTCGTCTGATGAACCTTGGATGTGCCACTGGCCACCCCAGCTTTGTCATGTCCTG
CTCTTTCACTAACCAGGTTATTGCCCAGCTCGAGTTGTGGAACGAGAAGGCCAGCGGCAA
GTACGAGAAGAAGGTGTACGTTCTCCCCAAGCACCTCGACGAGAAGGTTGCGGCCCTCCA
CTTGGGCAAGCTCGGCGCCAGGCTGACCAAGCTCACCAAGTCCCAGTCTGACTACATTAG
CATCCCGATCGAGGGTCCCTACAAGCCCGCGGCCTACCGGTACTAGTGTGTCCAGCACGA
CTAGCGGCTGGCCTGAGCCTGAGTCTGAGCAGCGGCGCCAACGGGAACTCTGCCACGGCG
ACCTATCAACTATCCTGTTTCCCTTCCATTATCTTACATGCTGTCTCTTAGGCGGAGGAT
TTGTTATTACGGTTATGTTTTGAGCCTTGTGAGGGTTGGGAGAGGCTGCGTTTGCTTTTG
CCCAGAAATAATGCCATTATCATTGGTTTATTAAAAAAAAAAAAAAAAAATCCGTCTGGC
TTGTTAAAAAAAAAAAAAATGCGGTTCTGTCTCGCTTGTTCTACCATGTCTGAAATCCTT
TGCAAGGTTGCTGTCGTTT

Homology of Contig U35_14559 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g26850.2	451	protein\|erythronate-4-phosphate dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi4g19457.1	456
Arabidopsis v10	AT4G13940.1	485	\| Symbols: HOG1, EMB1395, SAHH1, MEE58, ATSAHH1 \| S-adenosyl-L-homocysteine hydrolase \| chr4:8054931-8056676 FORWARD LENGTH=485