barSeed - Barley Seed Development Database

Probe ABC01646

Source Contig ABC01646

barSeed

Links

Affymetrix Source Sequence (1449 bp)

>ABC01646 1449
GAGCTGCACACCTCATCTCATCATCGTCTTCCCCCCATTGCCATCGACCTCCCTCCCTGC
GAGCAGCAGCAGCAGCAATGGCCAGCCTCGCCGACCTCGTTAATCTCAACCTCAGCGACT
GCACGGACAAGGTCATCGTCGAGTACCTCTGGGTTGGAGGATCTGGTATCGACATCAGGA
GCAAAGCAAGGACGGTGAACGGACCCATCACCGACGCGAGCCAGCTGCCCAAGTGGAACT
ACGACGGCTCCAGCACCGGCCAGGCTCCCGGAGAGGACAGCGAAGTCATCCTCTACCCCC
AGGCCATTTTCAAGGACCCGTTCAGGAGGGGTGACAACATCCTTGTTATGTGCGACTGCT
ACACACCACAAGGTGTGCCAATTCCCACTAACAAGAGGCACAATGCTGCCAAGATCTTCA
ACAGCGCTAAGGTTGCAGCTGAGGAGACATGGTATGGTATTGAGCAGGAGTACACACTCC
TCCAGAAGGATGTGAACTGGCCTCTTGGCTGGCCAATTGGTGGCTACCCTGGTCCTCAGG
GACCATACTACTGCGCCGCCGGTGCCGACAAGGCGTTCGGGCGTGACATCGTGGACGCCC
ACTACAAGGCGTGCCTCTACGCCGGGATCAACATCAGCGGCATCAACGGGGAGGTCATGC
CCGGCCAGTGGGAGTTCCAAGTTGGGCCGTCCGTCGGGATCGCCGCCTCCGACCAGCTGT
GGGTGGCGCGCTACATCCTCGAGAGGATCACAGAGGTTGCCGGGGTGGTGCTGTCCCTGG
ACCCGAAGCCGATCCCGGGTGACTGGAACGGCGCGGGCGCGCACACCAACTACAGCACCA
AGTCCATGAGGCAGGCCGGCGGCTACGAGGTGATCAAGAAGGCCATCGAGAAGCTTGGCA
AGCGCCACATGCAGCACATCGCCGCCTACGGCGAGGGCAACGAGCGCCGCCTCACCGGCC
ACCACGAGACCGCCGACATCAACACCTTCAAATGGGGCGTGGCGGACCGCGGCGCGTCCA
TCCGCGTGGGGCGCGACACGGAGAAGGACGGCAAGGGCTACTTCGAGGACCGCAGGCCGG
CCTCCAACATGGACCCCTACGTCGTCACCTCCATGATCGCCGAGACCACGCTTCTCCTCT
GAGCACACGGCCGGCAATGCCTACTCCACCGCCAGATGACACTTTGGGCAGGCTCTCGTC
TCGACTCTCTCGATCGAGGGTGGTGATTGATTTCTGCAAAACATTTCCCGTTTCCGTTTC
TTTTGCAATTGCAAGGTCTAGTCTGTTTTTGGGGCGTGCCTTTGGTATCTTTCATAGTAG
TACGTCTACTGCTCTTCAGGATAAGAAGAGTCTTCAGTGTACTCTGAAAATAATGTTGTT
TCCGCATTCTGATAAAATGGAATCATGGAACCGGTTGTGATTCTGTCTGTTCAAAAAAAA
AAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_15134.1	1104	0.0	163 - 1104	99	940 / 943	None	ABC01646 ABC01648
MLOC_11890.6	1495	0.0	80 - 1123	82	860 / 1050	CUST_5024_PI390587928 CUST_5021_PI390587928	ABC01646 ABC01648 ABC37056
MLOC_62034.1	1469	0.0	216 - 1258	82	857 / 1051	None	ABC01646 ABC01648
MLOC_11890.5	1266	0.0	34 - 1004	82	805 / 977	CUST_5024_PI390587928	ABC01646 ABC01648 ABC37056
MLOC_11890.1	2305	0.0	641 - 1611	82	805 / 977	CUST_5024_PI390587928 CUST_5021_PI390587928	ABC01646 ABC01648 ABC37056
MLOC_11890.3	2152	0.0	898 - 1819	83	770 / 928	CUST_5024_PI390587928	ABC01646 ABC01648 ABC37056
MLOC_11890.7	1635	0.0	148 - 1071	83	770 / 930	CUST_5024_PI390587928 CUST_5021_PI390587928	ABC01646 ABC01648 ABC37056
MLOC_16584.1	609	0.0	1 - 387	99	386 / 387	None	ABC01646
MLOC_62034.3	1586	1e-113	56 - 443	86	338 / 393	None	ABC01646 ABC01648
MLOC_62034.2	1514	5e-103	164 - 496	87	293 / 336	None	ABC01646 ABC01648
MLOC_11890.4	1005	7e-97	89 - 470	84	320 / 383	None	ABC01646