barSeed - Barley Seed Development Database

Probe CUST_5021_PI390587928

Source Contig U35_531

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5021_PI390587928	Hv_44K_v2	TCTCGTGTAATCATCGATTGATATGGTAATAAAATGGTCCGTACCGCAGCCGTGGTACCA	1588	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.159	2.944	1.208	0.823	0.246	0.405
Raw	1183.510	1361.562	479.020	539.409	54.067	100.686

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11890.6	1495	2e-24	1418 - 1477	100	60 / 60	plus	ABC01646 ABC01648 ABC37056
MLOC	MLOC_11890.7	1635	2e-24	1386 - 1445	100	60 / 60	plus	ABC01646 ABC01648 ABC37056
MLOC	MLOC_11890.2	4011	2e-24	3385 - 3444	100	60 / 60	plus	ABC37056
MLOC	MLOC_11890.8	1368	2e-24	1099 - 1158	100	60 / 60	plus	ABC01648 ABC37056
MLOC	MLOC_11890.1	2305	2e-24	1926 - 1985	100	60 / 60	plus	ABC01646 ABC01648 ABC37056
JLOC1	JLOC1_7929.2	1703	8e-25	1296 - 1355	100	60 / 60	plus
JLOC1	JLOC1_7929.1	2044	8e-25	1637 - 1696	100	60 / 60	plus
Harvest21	ABC01655	699	3e-25	610 - 669	100	60 / 60	plus
Harvest21	ABC01653	1639	3e-25	1544 - 1603	100	60 / 60	plus
Harvest21	ABC01651	854	3e-25	765 - 824	100	60 / 60	plus
Harvest35	U35_531	1710	3e-25	1589 - 1648	100	60 / 60	plus
Harvest35	U35_526	1042	3e-25	952 - 1011	100	60 / 60	plus

Contig Sequence (1710 bp)

>U35_531 1710 Hv_44K_v2
TGAGAAAGTTGGTCGAGAAAAGCCGCGCGTATAGCGGCGGTACACGGATACGTTGGTGCT
ACTGGCCTGGCCGCAACGAGTTTCCCTGCTCGCTCCTCCCCGCTGCCGGGTCGTCGCCAT
TATATAGCCGCCCTCCCGATCTCCCCTTGGCCTCGCACCACCTCCTCCATCACCTCCCTC
CCTGCCCTCAGTCGTCAGCCGGGTTCCTCCATCCCTCCCGCCATGGCGCTCCTCACCGAT
CTCCTCAACCTCGACCTCTCCGGCTCCACGGAGAAGATCATCGCCGAGTACATATGGATC
GGCGGATCTGGCATGGATCTCAGGAGCAAGGCCAGGACCCTCCCCGGCCCGGTCACCGAC
CCCAGCAAGCTGCCCAAGTGGAACTACGACGGCTCCAGCACCGGCCAGGCCCCGGGCGAG
GACAGCGAGGTCATCCTGTACCCACAGGCCATCTTCAAGGACCCGTTCAGGAAGGGAAAC
AACATCCTTGTCATGTGCGATTGCTACACCCCAGCTGGAGAGCCAATCCCCACCAACAAG
AGATACAACGCTGCTAAGATCTTTAGCAACCCCGATGTTGCCAAGGAGGAGCCATGGTAC
GGTATTGAGCAGGAGTACACCCTCCTACAGAAGGACATCAACTGGCCTCTCGGCTGGCCT
GTTGGTGGCTTCCCTGGTCCTCAGGGTCCTTACTACTGTGGTATTGGTGCTGACAAGTCG
TTTGGGCGTGACATAGTTGACTCCCACTACAAGGCTTGCCTCTTTGCCGGCGTCAACATC
AGTGGCATCAACGGCGAGGTCATGCCCGGACAGTGGGAGTTCCAAGTTGGCCCGACTGTT
GGCATTTCTGCTGGTGACCAAGTGTGGGTCGCTCGCTACATTCTTGAGAGGATCACCGAG
ATCGCCGGAGTTGTCGTCACGTTTGACCCCAAGCCCATCCCAGGCGACTGGAACGGTGCT
GGTGCTCACACGAACTACAGTACCGAGTCGATGAGGAATGACGGTGGGTTCAAGGTCATC
GTGGACGCGGTCGAGAAGCTCAAGCTGAAGCACAAGGAGCACATCGCGGCCTACGGCGAG
GGCAACGAGCGCCGTCTGACCGGCAAGCACGAGACGGCCGACATCAACACCTTCAGCTGG
GGTGTGGCAAACCGTGGCGCGTCGGTGCGCGTGGGCCGGGAGACGGAGCAGAACGGCAAG
GGCTACTTCGAGGACCGCCGGCCGGCGTCCAACATGGACCCCTACGTGGTCACCTCCATG
ATCGCCGAGACCACCATCCTGTGGAAGCCCTGAAGCTCCGATCGCCGTGTGATGGACCGT
CGGTGATGGGGTCCGGTGGTGGCCATTGGAGGATTCGTGCCTTGGGCGAAAATTCTTCCA
GCATTTTCCTTTTACGTTTGGTTGCATACTACTCCTAGTCCGCTTAGGTAGGTCACATCA
TCATGGTCATCTCATCAGGGTGTCTGGTCTCTCTTCTCGTTCTCGTCTTTGGGTGGGTGG
TGGGTGATGGGTGGCAAGGGGCGTGTCAAAGCACAAGATTACTACAGTATTTGGTTGATT
GTTTTCCCTTGCCGTCTGGATGCTATGGTCTCGTGTAATCATCGATTGATATGGTAATAA
AATGGTCCGTACCGCAGCCGTGGTACCACGCCGCTTGTCTCAAAAAAAAAAAAAAAAATG
TTATTAGTGCTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_531 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g50240.1	357	protein\|glutamine synthetase, catalytic domain containing protein, expressed
Brachypodium v1_2	Bradi3g59970.1	357
Arabidopsis v10	AT5G37600.1	356	\| Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 \| glutamine synthase clone R1 \| chr5:14933574-14935656 REVERSE LENGTH=356