barSeed - Barley Seed Development Database

Probe ABC01294

Source Contig ABC01294

barSeed

Links

Affymetrix Source Sequence (1822 bp)

>ABC01294 1822
AAAAACAACGGGCGGCCCTCCCCTCCGTCTCCCCTCGCCTTCTCCGCCCTCCGCTCCGAT
TCGATCCATCTCGGCTTCCTCTCCAAGCCCCTGCTCTTCCGGCCATGGCCGCCACGATCC
AGTCCGTCAAGGCCCGCCAGATCTTCGACAGCCGCGGCAACCCCACCGTCGAGGTTGATG
TGTGCTGCTCAGATGGAACCTTCGCCAGGGCCGCCGTTCCCAGCGGTGCATCAACTGGTG
TTTATGAAGCTTTGGAACTGAGGGACGGTGGATCTGACTACTTGGGAAAGGGTGTTTCGA
AGGCTGTCGACAATGTGAACTCGATTATCGCGCCAGCTTTGATTGGCAAGGACCCTACAG
CTCAAACTGAGCTCGACAACTTTATGGTTCAGCAGCTTGATGGAACCAAAAACGAGTGGG
GTTGGTGCAAGCAGAAGCTCGGTGCTAATGCTATCCTGGCTGTGTCACTAGCTGTTTGCA
AAGCTGGAGCCAGCGTCAAGAAGATTCCGCTGTACCAGCACATTGCCAACCTTGCTGGCA
ACAAGCAATTGGTTTTGCCTGTTCCTGCATTCAATGTTATCAATGGTGGTTCCCATGCTG
GAAACAAGCTTGCTATGCAGGAGTTCATGATTCTTCCTACTGGAGCTGCCTCATTCAAGG
AGGCAATGAAGATGGGCGTTGAAGTGTACCACAACTTGAAGTCTGTTATCAAGAAGAAGT
ATGGGCAGGATGCCACCAATGTTGGAGATGAAGGTGGTTTTGCTCCTAACATTCAGGAGA
ACAAGGAGGGCCTTGAGCTCTTGAAGACTGCAATTGAAAAGGCTGGATACACCGGCAAGG
TTGTCATTGGAATGGACGTTGCTGCTTCAGAGTTCTACAATGACAAGGACAAAACCTATG
ACCTCAACTTCAAGGAAGAGAACAACGATGGTTCCCAGAAGATATCTGGAGATAGCCTGA
AGAACGTATACAAGTCATTCGTGAGTGAGTACCCTATTGTGTCGATTGAGGACCCATTTG
ACCAGGATGACTGGGTTCACTATGCTAAGATGACTGAGGAATGCGGAGAGCAAGTTCAGA
TTGTTGGTGATGACCTTCTAGTCACCAACCCAACCAGAGTTGCGAAGGCTATCCAGGAGA
AGTCATGCAATGCTCTTCTGCTGAAGGTTAACCAAATTGGATCCGTCACTGAGAGTATCG
AGGCTGTGAAGATGTCAAAGCATGCTGGCTGGGGTGTGATGACCAGTCACAGGAGTGGTG
AGACTGAGGACACATTCATTGCTGATTTGGCTGTTGGTTTGTCCACGGGTCAGATCAAGA
CCGGGGCTCCCTGCCGCTCAGAGCGGCTTGCCAAGTACAACCAGCTTCTGAGGATCGAGG
AGGAGCTAGGCGCTGCCGCTGTGTATGCCGGCCTCAAGTTCCGTGCACCGGTGGAGCCAT
ACTAGATGGGATCTGCATCTGCGGCACGATCACCACTCTGCACTTGTTTTTTGTGGAAGT
GGGCGTGTCTCTTAACTTGCTGAATGAACTATGGTTGAAGCTGTTAGGACTTGTCGAGCA
ATAATGAACCGCATGTTGCTGTGAACTGGACGGATATGTACCCCCAAACTTGCTCCAATT
TTGGTCTTTGTGGTGAGCGAGCAAGCACGCCTGATTTGGCTCGGCCTTAACCTGTTGGAT
CTGTAGTGAACTGTTGGGCTGTTGGCATCATCTTATTGGCGTCAGTTTAGTCCTGTTGCC
GAAAGAAAGTTCGCCATTCTTAATTTACTTTTGCTTTCTGTTGTCTCTGTTTTAAAAACT
GCAAGATGAGAAACCTGCTTCG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK354060	1752	0.0	9 - 1751	99	1736 / 1743	CUST_8980_PI390587928 CUST_5145_PI390587928	ABC01294 ABC01300 ABC33585 ABC38303 ABC40560
AK358923	1722	0.0	18 - 1423	94	1337 / 1415	CUST_8980_PI390587928 CUST_30508_PI390587928 CUST_8986_PI390587928	ABC01289 ABC01294 ABC01298 ABC01300 ABC33585 ABC37518
AK249617.1	1753	0.0	93 - 1498	94	1335 / 1415	CUST_8980_PI390587928 CUST_30508_PI390587928	ABC01289 ABC01294 ABC01298 ABC01300 ABC33585 ABC37518
MLOC_31320.1	806	0.0	1 - 806	98	789 / 806	CUST_8980_PI390587928	ABC01294 ABC01300
MLOC_31320.2	768	0.0	4 - 768	98	751 / 765	CUST_8980_PI390587928	ABC01294 ABC01300
MLOC_31320.3	741	0.0	1 - 741	98	728 / 741	CUST_8980_PI390587928	ABC01294 ABC01300
MLOC_31792.1	1129	0.0	1 - 913	91	851 / 940	CUST_8986_PI390587928	ABC01289 ABC01294 ABC01300 ABC33585 ABC37518
MLOC_19856.1	636	0.0	74 - 636	100	563 / 563	None	ABC01294 ABC01300 ABC33585 ABC38303 ABC40560
AK253004.1	1679	0.0	129 - 1462	78	1053 / 1342	CUST_5146_PI390587928	ABC01294 ABC01298 ABC01300
MLOC_29232.3	512	0.0	1 - 503	94	475 / 503	CUST_30508_PI390587928	ABC01294 ABC01300
MLOC_35124.1	413	0.0	1 - 411	99	410 / 411	None	ABC01294 ABC01300
MLOC_29232.1	444	0.0	1 - 443	94	418 / 443	CUST_30508_PI390587928	ABC01294 ABC01300
MLOC_29232.2	448	0.0	1 - 443	94	418 / 443	CUST_30508_PI390587928	ABC01294 ABC01300
MLOC_29232.4	453	0.0	3 - 447	94	419 / 445	None	ABC01294 ABC01300
MLOC_21305.1	333	7e-83	159 - 332	99	172 / 174	None	ABC01294
MLOC_49758.1	197	2e-78	1 - 196	94	184 / 196	None	ABC01294 ABC01300
MLOC_59082.1	700	4e-75	191 - 698	77	393 / 511	None	ABC01294 ABC01298 ABC01300