- Probe CUST_8980_PI390587928
- Source Contig U35_14449
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8980_PI390587928 | Hv_44K_v2 | TGGGCGTTGAAGTGTACCACAACTTGAAGTCTGTTATCAAGAAGAAGTATGGGCAGGATG | 659 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.624 | 0.579 | 1.202 | 1.665 | 1.006 | 1.151 |
| Raw | 2163.677 | 2621.913 | 5700.267 | 12235.813 | 2663.803 | 3322.330 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK249617.1 | 1753 | 2e-24 | 727 - 786 | 100 | 60 / 60 | plus | ABC01289 ABC01294 ABC01298 ABC01300 ABC33585 ABC37518 |
| MLOC | AK358923 | 1722 | 2e-24 | 652 - 711 | 100 | 60 / 60 | plus | ABC01289 ABC01294 ABC01298 ABC01300 ABC33585 ABC37518 |
| MLOC | AK354060 | 1752 | 2e-24 | 681 - 740 | 100 | 60 / 60 | plus | ABC01294 ABC01300 ABC33585 ABC38303 ABC40560 |
| MLOC | MLOC_31320.2 | 768 | 2e-24 | 372 - 431 | 100 | 60 / 60 | plus | ABC01294 ABC01300 |
| MLOC | MLOC_31320.3 | 741 | 2e-24 | 325 - 384 | 100 | 60 / 60 | plus | ABC01294 ABC01300 |
| MLOC | MLOC_31320.1 | 806 | 2e-24 | 393 - 452 | 100 | 60 / 60 | plus | ABC01294 ABC01300 |
| JLOC1 | JLOC1_20598.1 | 591 | 8e-25 | 180 - 239 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27266 | 250 | 3e-25 | 151 - 210 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01303 | 703 | 3e-25 | 643 - 702 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01300 | 1724 | 3e-25 | 633 - 692 | 100 | 60 / 60 | plus | ABC01300 |
| Harvest21 | ABC01294 | 1822 | 3e-25 | 673 - 732 | 100 | 60 / 60 | plus | ABC01294 |
| Harvest21 | ABC01286 | 1295 | 3e-25 | 669 - 728 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_34200 | 474 | 3e-25 | 25 - 84 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14451 | 1792 | 3e-25 | 651 - 710 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14449 | 719 | 3e-25 | 660 - 719 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14444 | 1841 | 3e-25 | 669 - 728 | 100 | 60 / 60 | plus |
Contig Sequence (719 bp)
>U35_14449 719 Hv_44K_v2 CTGGCACCCGTACAGCCAACCGAACCCCCATCCCTCTCGCCCTCCGCTCCGATTCGATCC GCCTCGGCTTCCTCTCCAAGCCATGGCCGCCGCCGCCGCCACGATCCAGTCCGTCAAGGC CCGCCAGATCTTCGACAGCCGCGGCAACCCCACCGTCGAGGTCGATGTGTGCTGCTCCGA TGGAACCTTCGCCAGGGCCGCCGTTCCCAGCGGTGCATCGACCGGTGTTTATGAAGCTCT GGAACTGAGGGACGGCGGGTCTGACTACTTGGGCAAGGGGGTTTCCAAGGCTGTTGGCAA TGTGAACTCCATTATTGCACCCGCTTTGATCGGCAAGGACCCTACCGCTCAAACTGAGCT TGACAACTTTATGGTTCAGCAGCTTGATGGAACCAAGAATGAGTGGGGTTGGTGCAAGCA AAAGCTTGGTGCTAATGCGATCCTGGCTGTCTCGCTAGCTGTTTGCAAAGCTGGAGCCAG CGTCAAGAAGATTCCACTGTACCAGCACATTGCCAACCTTGCTGGCAACAAGCAGTTGGT TTTGCCTGTTCCTGCATTCAATGTCATCAATGGTGGATCCCATGCTGGAAACAAGCTTGC TATGCAGGAGTTCATGATCCTTCCTACTGGAGCTGCCTCGTTCAAGGAGGCAATGAAGAT GGGCGTTGAAGTGTACCACAACTTGAAGTCTGTTATCAAGAAGAAGTATGGGCAGGATG
Homology of Contig U35_14449 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g08550.3 | 479 | 2e-137 | protein|enolase, putative, expressed |
| Brachypodium v1_2 | Bradi3g22550.2 | 447 | 2e-139 | |
| Arabidopsis v10 | AT2G36530.1 | 444 | 1e-121 | | Symbols: LOS2, ENO2 | Enolase | chr2:15321081-15323786 REVERSE LENGTH=444 |