- Probe CUST_30508_PI390587928
- Source Contig U35_29227
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30508_PI390587928 | Hv_44K_v2 | AATGTCATCAATGGTGGATCCCATGCTGGAAACAAGCTTGCTATGCAGGAGTTCATGATC | 615 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.476 | 0.462 | 1.192 | 1.732 | 0.992 | 1.137 |
| Raw | 1125.053 | 1460.764 | 3881.487 | 8701.017 | 1800.773 | 2248.747 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK358923 | 1722 | 2e-24 | 552 - 611 | 100 | 60 / 60 | plus | ABC01289 ABC01294 ABC01298 ABC01300 ABC33585 ABC37518 |
| MLOC | MLOC_29232.1 | 444 | 2e-24 | 48 - 107 | 100 | 60 / 60 | minus | ABC01294 ABC01300 |
| MLOC | MLOC_29232.3 | 512 | 2e-24 | 48 - 107 | 100 | 60 / 60 | minus | ABC01294 ABC01300 |
| MLOC | MLOC_29232.2 | 448 | 2e-24 | 48 - 107 | 100 | 60 / 60 | minus | ABC01294 ABC01300 |
| MLOC | AK249617.1 | 1753 | 7e-23 | 627 - 686 | 98 | 59 / 60 | plus | ABC01289 ABC01294 ABC01298 ABC01300 ABC33585 ABC37518 |
| JLOC1 | JLOC1_19490.1 | 509 | 8e-25 | 403 - 462 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28456 | 675 | 3e-25 | 616 - 675 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01300 | 1724 | 3e-25 | 533 - 592 | 100 | 60 / 60 | plus | ABC01300 |
| Harvest21 | ABC01286 | 1295 | 3e-25 | 569 - 628 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01303 | 703 | 6e-22 | 543 - 602 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC01294 | 1822 | 2e-21 | 573 - 631 | 97 | 57 / 59 | plus | ABC01294 |
| Harvest35 | U35_29227 | 675 | 3e-25 | 616 - 675 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14449 | 719 | 3e-25 | 560 - 619 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14444 | 1841 | 3e-25 | 569 - 628 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14451 | 1792 | 2e-21 | 551 - 609 | 97 | 57 / 59 | plus |
Contig Sequence (675 bp)
>U35_29227 675 Hv_44K_v2 GCCCATCTCCATCCGTCGCCGCTTGGCTATAAGAAAGCAGGGGCAGTCCGTCCGTCCGTC CACCCGTACAGCCAACCGAACCCCCATCCCTCTCGCCCTCCGCTCCGATTCGATCCGCCT CGGCTTCCTCTCCAAGCCATGGCCGCCGCCGCCGCCACGATCCAGTCCGTCAAGGCCCGC CAGATCTTCGACAGCCGCGGCAACCCCACCGTCGAGGTCGATGTGTGCTGCTCCGATGGA ACCTTCGCCAGGGCCGCCGTTCCCAGCGGTGCATCGACCGGTGTTTATGAAGCTCTGGAA CTGAGGGACGGCGGGTCTGACTACTTGGGCAAGGGGGTTTCCAAGGCTGTTGGCAATGTG AACTCCATTATTGCACCCGCTTTGATCGGCAAGGACCCTACCGCTCAAACTGAGCTTGAC AACTTTATGGTTCAGCAGCTTGATGGAACCAAGAATGAGTGGGGTTGGTGCAAGCAAAAG CTTGGTGCTAATGCGATCCTGGCTGTCTCGCTAGCTGTTTGCAAAGCTGGAGCCAGCGTC AAGAAGATTCCACTGTACCAGCACATTGCCAACCTTGCTGGCAACAAGCAGTTGGTTTTG CCTGTTCCTGCATTCAATGTCATCAATGGTGGATCCCATGCTGGAAACAAGCTTGCTATG CAGGAGTTCATGATC
Homology of Contig U35_29227 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g08550.3 | 479 | 3e-112 | protein|enolase, putative, expressed |
| Brachypodium v1_2 | Bradi3g22550.2 | 447 | 1e-114 | |
| Arabidopsis v10 | AT2G36530.1 | 444 | 5e-98 | | Symbols: LOS2, ENO2 | Enolase | chr2:15321081-15323786 REVERSE LENGTH=444 |