barSeed - Barley Seed Development Database

Probe ABC00748

Source Contig ABC00748

barSeed

Links

Affymetrix Source Sequence (579 bp)

>ABC00748 579
TTTTTTTTCAGCCCTCACACATAACAGATACATAACATACTACCTCAGATCCTCAAGAAT
AAGTTTTAATACTAAAATTTCATCTGATCCACCAATACCAGGGATGAGGGATTCGCACAA
TATTTCACGAGCACGGGAATAAGATACATCGCTCAACAAAATCTCAACAGGTTGCCCACC
AAAGGGATCTAAGCAGCGGCAACCTCCTTCTTAAGCTTCGCTAGCTCCTGCCTGATAGCT
CCTCCCCTCTTGATCTTGGCAAGCATGACCTTGAACCTGTCAAAGTCATTGAGCGATGCC
CTCCTCTTCTGCCTCGGGCCGAATTCGGCACGAGGGATTTGTCCTTACCAAAGAAATAAA
TGGGGGGCGAGCGCTCTGCTTTACAGTTCCCGATTCAGTGATGGAGCACAGATCGGAGAG
TGTCATGCATCTGCTTGTCCTTTGTTACCATTCCTGTTGAGTCCCCATGTTGTCATGGAA
GGGAAACTGGATGGATGCTATGTTATTGGTACTTTGTCAGGGAACCAAAATTTGAATGAA
TGAATAAGAGATTTTTGTTTTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_44154.1	730	6e-129	472 - 730	99	256 / 259	None	ABC00036 ABC00166 ABC00748
MLOC_59358.4	2865	3e-107	2583 - 2827	96	234 / 245	CUST_26429_PI390587928 CUST_22829_PI390587928	ABC00602 ABC00748 ABC00823 ABC48303
MLOC_59358.3	1609	1e-100	8 - 234	96	218 / 227	CUST_22829_PI390587928 CUST_26429_PI390587928	ABC00602 ABC00748 ABC00823 ABC48303
MLOC_59358.2	1606	1e-100	8 - 234	96	218 / 227	CUST_22829_PI390587928 CUST_26429_PI390587928	ABC00602 ABC00748 ABC00823 ABC48303
MLOC_59358.1	1679	1e-100	24 - 250	96	218 / 227	CUST_26429_PI390587928 CUST_22829_PI390587928	ABC00602 ABC00748 ABC00823 ABC48303
MLOC_59358.5	1616	3e-87	1 - 181	99	179 / 181	CUST_22829_PI390587928	ABC00602 ABC00748 ABC00823 ABC48303
MLOC_59358.6	1348	1e-55	1 - 124	98	122 / 124	None	ABC00748 ABC00823 ABC48303