- Probe CUST_22829_PI390587928
- Source Contig U35_37262
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22829_PI390587928 | Hv_44K_v2 | TGCAGGCCAACCCTGACCTGATCATTGGAAACTACAGTGACGGTAACCTTGTCGCGTGGG | 137 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.040 | 0.161 | 1.226 | 1.907 | 1.131 | 0.921 |
| Raw | 193.456 | 1062.698 | 8128.613 | 19294.480 | 4119.547 | 3670.997 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_59358.4 | 2865 | 2e-23 | 1353 - 1410 | 100 | 58 / 58 | plus | ABC00602 ABC00748 ABC00823 ABC48303 |
| MLOC | MLOC_59358.3 | 1609 | 2e-23 | 1408 - 1465 | 100 | 58 / 58 | minus | ABC00602 ABC00748 ABC00823 ABC48303 |
| MLOC | MLOC_59358.2 | 1606 | 2e-23 | 1408 - 1465 | 100 | 58 / 58 | minus | ABC00602 ABC00748 ABC00823 ABC48303 |
| MLOC | MLOC_59358.5 | 1616 | 2e-23 | 1439 - 1496 | 100 | 58 / 58 | minus | ABC00602 ABC00748 ABC00823 ABC48303 |
| MLOC | MLOC_59358.7 | 1352 | 2e-23 | 1096 - 1153 | 100 | 58 / 58 | minus | ABC00602 ABC00823 |
| MLOC | MLOC_59358.1 | 1679 | 2e-23 | 1423 - 1480 | 100 | 58 / 58 | minus | ABC00602 ABC00748 ABC00823 ABC48303 |
| JLOC1 | JLOC1_38625.1 | 3048 | 1e-23 | 1506 - 1563 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC33010 | 226 | 3e-25 | 138 - 197 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52795 | 666 | 4e-24 | 120 - 177 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC00823 | 2846 | 4e-24 | 1371 - 1428 | 100 | 58 / 58 | plus | ABC00823 |
| Harvest21 | ABC00786 | 474 | 4e-24 | 41 - 98 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC33086 | 434 | 5e-23 | 141 - 198 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_37262 | 226 | 3e-25 | 138 - 197 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14483 | 2849 | 4e-24 | 1371 - 1428 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_14481 | 1111 | 4e-24 | 120 - 177 | 100 | 58 / 58 | plus |
Contig Sequence (226 bp)
>U35_37262 226 Hv_44K_v2 GACCCCCCGGGCTGTTTGAGAGGGGGCACGAGGCAAAACAAACATGCTATCGCCCGGAAA TGGATCTCCCGTTTAGAATTCTGGCCTTACGCGGGAAGCTTACACCGATGATGTGGCACA TGAGATCGCCGGAGAGCTGCAGGCCAACCCTGACCTGATCATTGGAAACTACAGTGACGG TAACCTTGTCGCGTGGGGGGGGGCACACAAGTTTTTTTTTACTCAT
Homology of Contig U35_37262 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |