barSeed - Barley Seed Development Database

Probe ABC00228

Source Contig ABC00228

barSeed

Links

Affymetrix Source Sequence (836 bp)

>ABC00228 836
GCGAAATCCCCCAAGACCCAAAAAGGCCCCAGCAACTCCAGACCGTCGAGTTGAATCTGA
GTTTACTTGGAGAGATTTGATTCATTCAACCAGTCGAGATGGCGCAGGCAATCGAGGCTC
AGAGGGAGGGCGCGGAGGTGTACCACGGCGCGGCGCTGTGCGCGGAGAAGGCGGTGGAGC
TGCTGGCCGAGACCAACTTGCCGCTGGGCCTGCTGCCGCTGGCCGACATCGAGGAGGTGG
GTTACAACCGCGCCACCGGCTTCGTCTGGCTTCGCCAGAAGAAGGCGCTCACGCACACCT
TCAAGCAGATCGGGAGGCAGGTCTCGTACGCCACCGAGGTGACGGCCTTCGTCGAGGACC
GCAAGATGAAGCGCATGACCGGGGTCAAGAGCAAGGAACTCCTCATCTGGATCACCCTCT
GTGATATGTACATCGACAAGGATGACCCCTCCAAGATCACCTTCAAGACGCCCACCGGGC
TCAGGAGGACCTTCCCCGTCTCCGCCTTCGGCAAAGTGGACGATGGCAAGGCCAAGGTCC
CCGCCACCGCAGCTGCCGACGGCAAGGAGGCCGCCGTGGCCAAGTAAAGTGACGACTACC
AACAAGCTACAAGAGTTTGGATGAAGATTTTTTAAAGAAAAAAGTTTGAACGAAGAGTTA
TTCAATTGTCATCTACGACTACTACTTGCTTTGAAAATTTACAAAGTAATTCATGGATGT
AAGTCATTATATAATATATGCATATGCAAAAATTCAAAAAAAAAAAACTCCATCGGTTTT
TATTTACTTCACATATTAGCTTGAACAGAAGTCAAACTTTATAAATTTACGAAGTT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_64088.1	1791	0.0	798 - 1626	98	823 / 837	CUST_41498_PI390587928	ABC00125 ABC00228
MLOC_64088.2	836	2e-65	544 - 679	100	136 / 136	CUST_41498_PI390587928	ABC00125 ABC00228
AK370416	1149	0.0	71 - 632	91	528 / 579	CUST_41499_PI390587928	ABC00125 ABC00228 ABC37743
MLOC_32014.1	519	2e-95	266 - 519	91	236 / 258	None	ABC00125 ABC00228
MLOC_48161.1	170	3e-64	4 - 167	94	154 / 164	None	ABC00125 ABC00228
MLOC_29490.1	839	2e-60	603 - 839	85	212 / 250	CUST_41499_PI390587928	ABC00125 ABC00228 ABC37743
MLOC_1543.1	179	1e-57	27 - 178	93	142 / 152	None	ABC00125 ABC00228