barSeed - Barley Seed Development Database

Probe CUST_41498_PI390587928

Source Contig U35_722

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41498_PI390587928	Hv_44K_v2	CCAAGTAAAGTGACGACTACCAACAAGCTACAAGAGTTTGGATGAAGATTTTTTAAAGAA	580	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.170	0.399	0.813	1.779	1.222	1.647
Raw	49.806	182.449	345.737	1227.439	272.932	404.766

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64088.1	1791	2e-24	989 - 1048	100	60 / 60	minus	ABC00125 ABC00228
MLOC	MLOC_64088.2	836	2e-24	96 - 155	100	60 / 60	minus	ABC00125 ABC00228
JLOC1	JLOC1_42038.2	2621	8e-25	736 - 795	100	60 / 60	plus
JLOC1	JLOC1_42038.1	1621	8e-25	736 - 795	100	60 / 60	plus
Harvest21	ABC49484	498	3e-25	215 - 274	100	60 / 60	minus
Harvest21	ABC00228	836	3e-25	580 - 639	100	60 / 60	plus	ABC00228
Harvest35	U35_722	913	3e-25	581 - 640	100	60 / 60	plus

Contig Sequence (913 bp)

>U35_722 913 Hv_44K_v2
GGCGAAATCCCCCAAGACCCAAAAAGGCCCCAGCAACTCCAGACCGTCGAGTTGAATCTG
AGTTTACTTGGAGAGATTTGATTCATTCAACCAGTCGAGATGGCGCAGGCAATCGAGGCT
CAGAGGGAGGGCGCGGAGGTGTACCACGGCGCGGCGCTGTGCGCGGAGAAGGCGGTGGAG
CTGCTGGCCGAGACCAACTTGCCGCTGGGCCTGCTGCCGCTGGCCGACATCGAGGAGGTG
GGTTACAACCGCGCCACCGGCTTCGTCTGGCTTCGCCAGAAGAAGGCGCTCACGCACACC
TTCAAGCAGATCGGGAGGCAGGTCTCGTACGCCACCGAGGTGACGGCCTTCGTCGAGGAC
CGCAAGATGAAGCGCATGACCGGGGTCAAGAGCAAGGAACTCCTCATCTGGATCACCCTC
TGTGATATGTACATCGACAAGGATGACCCCTCCAAGATCACCTTCAAGACGCCCACCGGG
CTCAGGAGGACCTTCCCCGTCTCCGCCTTCGGCAAAGTGGACGATGGCAAGGCCAAGGTC
CCCGCCACCGCAGCTGCCGACGGCAAGGAGGCCGCCGTGGCCAAGTAAAGTGACGACTAC
CAACAAGCTACAAGAGTTTGGATGAAGATTTTTTAAAGAAAAAAGTTTGAACGAAGAGTT
ATTCAATTGTCATCTACGACTACTACTTGCTTTGAAAATTTACAAAGTAATTCATGGATG
TAAGTCATTATATAATATATGCATATGCAAAAATTCCTTACTCCATCGGTTTTAATTTAC
TTCACATATTAGCTTGAACAGAAGTCAAACTTTATAAAATTTTACGAAGTTTGTACTAGC
AATATGTTAATATATGATGTGAATATGTGCAATGATGAATTGAATGATATTGAATGAAAA
AAAAAAAAAAAAA

Homology of Contig U35_722 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g11240.1	168	3e-82	protein\|DUF538 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g06740.1	165	7e-84
Arabidopsis v10	None