barSeed - Barley Seed Development Database

Probe ABC00125

Source Contig ABC00125

barSeed

Links

Affymetrix Source Sequence (990 bp)

>ABC00125 990
CCGGAACGGAAAACACCAAACCTACTTTCCCCCTATAAAATCAGCCCCTCCTCACCCCCC
AATACAACAGCAGCAAACCAAATACCCCAATACCAAAAAAGGCCCCAGCAACTCGGGCGC
GTCGACTCCTCCATCCAGAGTTGAATCTGAGTTTACTTCGCGAGATTTGATTCAACCAGT
CGAGATGGCGCAGGCGATCGAGGCTCAGAGGGAGGGCGCGGAGGTGTACCACGGCGCGGC
GCTGTGCGCGGAGAAGGCGGTGGAGCTGCTGGCCGAGACCAACATGCCGCTGGGCCTGCT
GCCGCTGGCGGACATGGAGGAGGTGGGCTACAACCGCGCCACCGGCTTCGTCTGGCTGCG
CCAGAAGAAGGCGCTCACGCACACCTTCAAGCAGATCGGGCGGCAGGTCTCGTACGCCAC
CGAGGTGACGGCCTTCGTCGAGGACCGCAAGATGAAGCGCATGACCGGGGTCAAGAGCAA
GGAGCTCCTCATCTGGATCACGCTCTGCGACATGTTCATCGACAAGGACGACCCCTCCAA
GATCACCTTCAAGACGCCCACCGGGCTCGGGAGGACCTTCCCCGTCTCCGCCTTCGAGAA
GAAGGACGACGCCAAGGCTACGGCCGCAGCTGCCGGCGGCAAGGAGGCCGTCGTTGCCAA
GTAAGTCAGGACGGCCGGCATACTCTACAAAGTTTGGATTGGATGAAGAGTTCTCGAGTC
CAATGTTAACCACGACGATTACTATCTTCTATAATCTGTTTTTACCAGTAATAAACTACG
TACTCCTATATAAGGTCGCAGTACTCTGCTCCGGTGTTTTGCCGAGGGTTGTATCATTCA
TATGATGTTTATATAGTTTTATTATCTGCTCTTTCGCTGCAAAAAAACTGTGAACCTTTT
TGTGACAGTATCACGAGTTGTACGTGACTACGTGTTCTCAGATTTTATTTTAGGCATGAA
AAGCTTCTCTCCTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK370416	1149	0.0	2 - 905	99	900 / 904	CUST_41499_PI390587928	ABC00125 ABC00228 ABC37743
MLOC_29490.1	839	0.0	330 - 839	99	505 / 510	CUST_41499_PI390587928	ABC00125 ABC00228 ABC37743
MLOC_64088.1	1791	0.0	1006 - 1679	89	613 / 692	CUST_41498_PI390587928	ABC00125 ABC00228
MLOC_64088.2	836	2e-156	113 - 546	90	395 / 438	CUST_41498_PI390587928	ABC00125 ABC00228
MLOC_32014.1	519	3e-138	200 - 519	94	305 / 323	None	ABC00125 ABC00228
MLOC_80905.1	313	2e-75	160 - 313	100	154 / 154	None	ABC00125
MLOC_48161.1	170	1e-72	4 - 167	97	159 / 164	None	ABC00125 ABC00228
MLOC_1543.1	179	6e-66	27 - 178	97	147 / 152	None	ABC00125 ABC00228