Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u29262	81.8	-	-	4376	-972	Containing

Transcripts from Gene HORVU4Hr1G050700

Transcript	Length(bp)	Description
HORVU4Hr1G050700.1	4160	gene=HORVU4Hr1G050700 CDS=273-2822
HORVU4Hr1G050700.2	4283	gene=HORVU4Hr1G050700 CDS=273-2945
HORVU4Hr1G050700.3	3479	gene=HORVU4Hr1G050700 CDS=296-2968
HORVU4Hr1G050700.4	3511	gene=HORVU4Hr1G050700 CDS=344-3016
HORVU4Hr1G050700.5	3008	gene=HORVU4Hr1G050700 CDS=366-2936

Exon Structure of HORVU4Hr1G050700

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os01g56330.1	+3	0.0	1451	742/855 (87%)	protein|TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed
TAIR PP10	AT3G51550 @ ARAPORT AT3G51550.1 @ TAIR	+3	0.0	1088	567/874 (65%)	Symbols: FER | Malectin/receptor-like protein kinase family protein | chr3:19117877-19120564 REVERSE LENGTH=895
BRACH PP3	Bradi1g63320.1.p	+3	0.0	1535	787/855 (92%)	pacid=32800622 transcript=Bradi1g63320.1 locus=Bradi1g63320 ID=Bradi1g63320.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons