- Transcript HORVU4Hr1G050700.5
- Transcript IDHORVU4Hr1G050700.5
- Gene IDHORVU4Hr1G050700
Barley RTD
Exon Structure of HORVU4Hr1G050700.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 413787934 | 413785883 | - |
| chr4H | 2 | 413788992 | 413788037 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g56330.1 | +3 | 0.0 | 1380 | 716/855 (84%) | protein|TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed |
| TAIR PP10 | AT3G51550 @ ARAPORT AT3G51550.1 @ TAIR |
+3 | 0.0 | 1060 | 557/873 (64%) | Symbols: FER | Malectin/receptor-like protein kinase family protein | chr3:19117877-19120564 REVERSE LENGTH=895 |
| BRACH PP3 | Bradi1g63320.1.p | +3 | 0.0 | 1468 | 763/855 (89%) | pacid=32800622 transcript=Bradi1g63320.1 locus=Bradi1g63320 ID=Bradi1g63320.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3008 bp)
>HORVU4Hr1G050700.5 3008 150831_barley_pseudomolecules CCCCCACCGGCCAGTGGAACACACCAGGCCACGAGAGTGACACACGCACGCTACCGCGGC GGTGAAAAGAGGCAGAGCAAGCGCAGCGGCAGCACAGCAGTCGTAGAGAGAGCCGAGCGG AGTAGGTCGCCGTTGCCGTTGCTGGCAACCCCACTTTAATGCCGCGCCCGTAGTCCCGAA ACCTCTCTCCCCTTCCTTTCTTCCCTGACGCCACCTCGGCCACCACTTTCCCCTCAAATC TCACCTCCTCCGCCACGCGCTGCCCGCCGCTTCTCTCGCCAGCACGCAAATCCGCCCCCA GATCGGCGCCGGGAGAGCCGTTTCATGGGCGATCTGTGAGCCGCGACGAAACGCAAGCTA CTGCCATGAGAGGGCCCCCGAGATGCGCGCTCCTGCTCCTCCTGGCCGCCGCGGCGCTTG TCCCCGCAGCGCGGGCGCAGGGGGCGGCCGCGCCCGCGCCCTCGGCGGGGGCCGCGTTCG TTCCGCGGGACGACATCCTGCTCGACTGCGGCGCCACGGGGAAGGGGAACGACACGGACG GCCGCCAGTGGGACGGCGACGCGGGGTCCAAGTACGCGCCTCCAAACCTCGCCTCGGCCA GCGCCGGGGCGCAGGACCCCTCGGTGCCGCAGGTGCCCTACCTCACCGCGCGGGTGTCGG CGGCGCCCTTCACCTACTCCTTCCCGCTCGGCCCCGGCCGCAAGTTCCTCAGGCTGCACT TCTACCCGGCAAACTACTCCAACCGCGACGCCGCCGACGCCTTCTTCTCCGTCTCCGTCC CGGCCGCCAAGGTCACGCTCCTCTCCAACTTCAGCGCCTACCAGACCATAACGGCGCTCA ACTTCGCCTACCTCGTGCGCGAGTTCTCCGTCAACGTCACCGGCCAGAACCTCGACCTCA CCTTCACTCCGGAGAAGGGCCGCCCCAACGCCTACGCCTTCGTCAACGGCATCGAGACCA TGTATCGGCTCAACGTCGGAGGCCAGGCCATCTCCCCTTCCAAGGACTCCGGCGGGGCTC GCTCATGGGACGACGACACGCCTTACATTTACGGTGCAGGGGCAGGGGTATCGTACCAGA ACGATCCCAATGTCACAATCACCTATCCTGACAATGTGCCGGGATATGTGGCACCTTCGG ATGTCTATGCCACGGCGCGATCAATGGGGCCAGACAAGGGTGTAAACTTGGCCTACAATC TCACCTGGATATTGCAGGTGGATGCTGGGTACCAATACCTTGTGAGGCTCCATTTCTGTG AGATACAATCCCCATTTACTAAACCCAACCAGCGGGTCTTCAGCATCTACCTCAACAACC AGACTGCCATGAAAGGTGCTGATGTGATCCTGTGGGCGGATCCCAATGGTATTGGTACTC CAGTGTATAAGGACTATGTGGTGAGCACTGTGGGTTCTGGGACTATGGATTTCTGGGTGG CTTTACATCCGGATGTAGAGACGAAGCCGCAGTACTATGATGCTATTCTCAATGGGATGG AGGTGTTCAAGCTGCAACTTACTAATGGGAGCCTCGTGGGGCTCAATCCTCTCCCAAGTC CTGATCCACCAGTGAATAGCGGGTCAGGAAACAAGAAATCAATAGTCGTGCCGATTGTTG GTGGAGTAGTCGGAGGTTTGGCAGTGCTTGCGCTTGGATATTGCTGCTTCATCTGCAAGC GTCGGAGGAAAGCGGCCAAGGCTAGCGGCATGAGTGATGGCCATTCTGGTTGGCTCCCAT TGTCGCTGTATGGCCATTCACACACTTCAAGCTCAGCCAAGTCGCATGCTACAGGCAGTT ATGCTTCATCTTTGCCATCCAACCTGTGCCGCCACTTCTCATTTGCGGAGATCAAGGCCG CAACAAAAAACTTTGATGAGTCACGAATCCTTGGTGTTGGTGGGTTCGGTAAAGTTTACC ATGGAGAAATTGACGGGGGCACAACTAAGGTGGCTATCAAGCGTGGCAATCCCTTGTCTG AGCAGGGCATACATGAGTTCCAGACTGAAATTGAAATGTTGTCAAAGCTCCGGCACCGTC ATCTTGTGTCGCTGATTGGTTACTGCGAGGAGAAGAATGAGATGATCCTGGTCTATGACT ACATGGCTCATGGAACCCTGCGTGAGCACCTATACAAGACCCAGAATGCACCGCTTAGCT GGAGGCAGCGTTTGGAGATCTGCATCGGTGCTGCTCGTGGGCTTCACTACCTTCATACCG GTGCAAAGCACACCATTATCCACCGTGATGTGAAGACGACAAACATCCTCCTGGATGAGA AATGGGTTGCCAAGGTTTCAGATTTTGGTCTGTCCAAGACTGGGCCATCGATGGATCACA CACATGTGAGCACAGTTGTCAAGGGCAGTTTTGGTTACCTTGATCCTGAATATTTCCGCA GGCAGCAGCTCACTGAGAAATCTGATGTCTATTCCTTTGGTGTGGTGCTGTTCGAGGTCC TTTGTGCTCGGCCTGCCTTGAACCCCACTCTTGCAAAGGAAGAAGTTAGCTTGGCAGAGT GGGCATTGCACTGCCAAAAGAAGGGAATTCTTGATCAGATTGTTGATCCCTACCTCAAAG GAAAGATTGTTCCGCAGTGCTTCAAGAAGTTTGCCGAGACGGCTGAGAAGTGTGTTGCCG ACAATGGCATTGAGCGCCCTTCGATGGGAGATGTGCTTTGGAACTTGGAGTTTGCTCTTC AGATGCAGGAAAGCGCGGAGGAGAGCGGAAGCATTGGCTGTGGGATGTCAGATGAGGGCA CTCCCCTCGTGATGGTTGGAAAGAAGGATCCCAATGACCCATCAATTGATTCAAGCACCA CGACGACCACAACAACTTCCTTAAGCATGGGTGACCAAAGTGTCGCGAGCATCGACTCGG ATGGGCTGACGCCAAGCGCGGTGTTCTCACAGATCATGAACCCCAAGGGGCGGTGAGGTG AGGTAAAAATCTGGGTCTGCTTGTTAGTCAGTCACCCTTGGGGCCTGCCTAACTTATTCA TTCAGCAT