- Gene BART1_0-u42525
- Gene IDBART1_0-u42525
- Location chr6H: 22229155 - 22234573
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU6Hr1G011910 | 99.9 | + | + | 5410 | 5690 | Partial-Overlap |
Transcripts from Gene BART1_0-u42525
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u42525.001 | 1871 | 1871 bp MSTRG.42525.1 MSTRG.42525 |
| BART1_0-u42525.002 | 1751 | 1751 bp MSTRG.42525.2 MSTRG.42525 |
| BART1_0-u42525.003 | 1781 | 1781 bp MSTRG.42525.3 MSTRG.42525 |
| BART1_0-u42525.004 | 1953 | 1953 bp MSTRG.42525.4 MSTRG.42525 |
| BART1_0-u42525.005 | 1649 | 1649 bp MSTRG.42525.5 MSTRG.42525 |
| BART1_0-u42525.006 | 1727 | 1727 bp MSTRG.42525.6 MSTRG.42525 |
| BART1_0-u42525.007 | 1326 | 1326 bp MSTRG.42525.7 MSTRG.42525 |
Exon Structure of BART1_0-u42525
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g03050.1 | +1 | 4e-109 | 328 | 159/190 (84%) | protein|dimethyladenosine transferase, putative, expressed |
| TAIR PP10 | AT1G01860 @ ARAPORT AT1G01860.1 @ TAIR |
+1 | 9e-90 | 283 | 166/268 (62%) | Symbols: PFC1 | Ribosomal RNA adenine dimethylase family protein | chr1:304439-306275 REVERSE LENGTH=343 |
| BRACH PP3 | Bradi3g02232.3.p | +1 | 6e-141 | 415 | 244/266 (92%) | pacid=32819654 transcript=Bradi3g02232.3 locus=Bradi3g02232 ID=Bradi3g02232.3.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0016559 | peroxisome fission |
| GO:0005779 | integral component of peroxisomal membrane |
| GO:0003723 | RNA binding |
| GO:0031167 | rRNA methylation |
| GO:0000179 | rRNA (adenine-N6,N6-)-dimethyltransferase activity |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons