Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u42531	66.4	+	+	3716	5508	Partial-Overlap
BART1_0-u42525	99.9	+	+	5410	5690	Partial-Overlap

Transcripts from Gene HORVU6Hr1G011910

Transcript	Length(bp)	Description
HORVU6Hr1G011910.1	2034	gene=HORVU6Hr1G011910 CDS=1-1086
HORVU6Hr1G011910.2	1540	gene=HORVU6Hr1G011910 CDS=1-1008
HORVU6Hr1G011910.3	1680	gene=HORVU6Hr1G011910 CDS=1-984
HORVU6Hr1G011910.4	1698	gene=HORVU6Hr1G011910 CDS=3-851
HORVU6Hr1G011910.5	1703	gene=HORVU6Hr1G011910 CDS=3-725
HORVU6Hr1G011910.6	2153	gene=HORVU6Hr1G011910 CDS=3-686
HORVU6Hr1G011910.7	1616	gene=HORVU6Hr1G011910 CDS=322-717
HORVU6Hr1G011910.8	2259	gene=HORVU6Hr1G011910 CDS=3-587
HORVU6Hr1G011910.9	1717	gene=HORVU6Hr1G011910 CDS=3-887
HORVU6Hr1G011910.10	1831	gene=HORVU6Hr1G011910 CDS=3-488
HORVU6Hr1G011910.11	2257	gene=HORVU6Hr1G011910 CDS=3-641
HORVU6Hr1G011910.12	1616	gene=HORVU6Hr1G011910 CDS=3-638
HORVU6Hr1G011910.13	930	gene=HORVU6Hr1G011910 CDS=3-773
HORVU6Hr1G011910.14	1599	gene=HORVU6Hr1G011910 CDS=437-850
HORVU6Hr1G011910.15	1789	gene=HORVU6Hr1G011910 CDS=3-548
HORVU6Hr1G011910.16	1328	gene=HORVU6Hr1G011910 CDS=2-760
HORVU6Hr1G011910.17	1619	gene=HORVU6Hr1G011910 CDS=3-440
HORVU6Hr1G011910.18	1713	gene=HORVU6Hr1G011910 CDS=2-436
HORVU6Hr1G011910.19	1102	gene=HORVU6Hr1G011910 CDS=320-823
HORVU6Hr1G011910.20	784	gene=HORVU6Hr1G011910 CDS=3-782
HORVU6Hr1G011910.21	1559	gene=HORVU6Hr1G011910 CDS=2-529
HORVU6Hr1G011910.22	1000	gene=HORVU6Hr1G011910 CDS=2-640
HORVU6Hr1G011910.23	1158	gene=HORVU6Hr1G011910 CDS=1-597
HORVU6Hr1G011910.24	682	gene=HORVU6Hr1G011910 CDS=69-638
HORVU6Hr1G011910.25	1162	gene=HORVU6Hr1G011910 CDS=1-498
HORVU6Hr1G011910.26	1093	gene=HORVU6Hr1G011910 CDS=305-460
HORVU6Hr1G011910.27	1063	gene=HORVU6Hr1G011910 CDS=3-182
HORVU6Hr1G011910.28	1809	gene=HORVU6Hr1G011910 CDS=1279-1809
HORVU6Hr1G011910.29	2311	gene=HORVU6Hr1G011910 CDS=1278-2021
HORVU6Hr1G011910.30	1275	gene=HORVU6Hr1G011910 CDS=2-985
HORVU6Hr1G011910.31	1578	gene=HORVU6Hr1G011910 CDS=616-1326
HORVU6Hr1G011910.32	1771	gene=HORVU6Hr1G011910 CDS=754-1497
HORVU6Hr1G011910.33	2085	gene=HORVU6Hr1G011910 CDS=1124-1834
HORVU6Hr1G011910.34	3458	gene=HORVU6Hr1G011910 CDS=1232-1675
HORVU6Hr1G011910.35	1481	gene=HORVU6Hr1G011910 CDS=203-646

Exon Structure of HORVU6Hr1G011910

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os02g03040.2	+3	2e-62	144	95/125 (76%)	protein|RNA recognition motif containing protein, expressed
TAIR PP10	AT5G52040 @ ARAPORT AT5G52040.3 @ TAIR	+2	2e-33	100	45/56 (80%)	Symbols: RS41, At-RS41 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21131791-21133318 FORWARD LENGTH=329
BRACH PP3	Bradi3g02226.1.p	+3	1e-68	155	108/117 (92%)	pacid=32814082 transcript=Bradi3g02226.1 locus=Bradi3g02226 ID=Bradi3g02226.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons