- Gene HORVU6Hr1G011910
- Gene IDHORVU6Hr1G011910
- Location chr6H: 22229164 - 22240272
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
BART1_0-u42531 | 66.4 | + | + | 3716 | 5508 | Partial-Overlap |
BART1_0-u42525 | 99.9 | + | + | 5410 | 5690 | Partial-Overlap |
Transcripts from Gene HORVU6Hr1G011910
Transcript | Length(bp) | Description |
---|---|---|
HORVU6Hr1G011910.1 | 2034 | gene=HORVU6Hr1G011910 CDS=1-1086 |
HORVU6Hr1G011910.2 | 1540 | gene=HORVU6Hr1G011910 CDS=1-1008 |
HORVU6Hr1G011910.3 | 1680 | gene=HORVU6Hr1G011910 CDS=1-984 |
HORVU6Hr1G011910.4 | 1698 | gene=HORVU6Hr1G011910 CDS=3-851 |
HORVU6Hr1G011910.5 | 1703 | gene=HORVU6Hr1G011910 CDS=3-725 |
HORVU6Hr1G011910.6 | 2153 | gene=HORVU6Hr1G011910 CDS=3-686 |
HORVU6Hr1G011910.7 | 1616 | gene=HORVU6Hr1G011910 CDS=322-717 |
HORVU6Hr1G011910.8 | 2259 | gene=HORVU6Hr1G011910 CDS=3-587 |
HORVU6Hr1G011910.9 | 1717 | gene=HORVU6Hr1G011910 CDS=3-887 |
HORVU6Hr1G011910.10 | 1831 | gene=HORVU6Hr1G011910 CDS=3-488 |
HORVU6Hr1G011910.11 | 2257 | gene=HORVU6Hr1G011910 CDS=3-641 |
HORVU6Hr1G011910.12 | 1616 | gene=HORVU6Hr1G011910 CDS=3-638 |
HORVU6Hr1G011910.13 | 930 | gene=HORVU6Hr1G011910 CDS=3-773 |
HORVU6Hr1G011910.14 | 1599 | gene=HORVU6Hr1G011910 CDS=437-850 |
HORVU6Hr1G011910.15 | 1789 | gene=HORVU6Hr1G011910 CDS=3-548 |
HORVU6Hr1G011910.16 | 1328 | gene=HORVU6Hr1G011910 CDS=2-760 |
HORVU6Hr1G011910.17 | 1619 | gene=HORVU6Hr1G011910 CDS=3-440 |
HORVU6Hr1G011910.18 | 1713 | gene=HORVU6Hr1G011910 CDS=2-436 |
HORVU6Hr1G011910.19 | 1102 | gene=HORVU6Hr1G011910 CDS=320-823 |
HORVU6Hr1G011910.20 | 784 | gene=HORVU6Hr1G011910 CDS=3-782 |
HORVU6Hr1G011910.21 | 1559 | gene=HORVU6Hr1G011910 CDS=2-529 |
HORVU6Hr1G011910.22 | 1000 | gene=HORVU6Hr1G011910 CDS=2-640 |
HORVU6Hr1G011910.23 | 1158 | gene=HORVU6Hr1G011910 CDS=1-597 |
HORVU6Hr1G011910.24 | 682 | gene=HORVU6Hr1G011910 CDS=69-638 |
HORVU6Hr1G011910.25 | 1162 | gene=HORVU6Hr1G011910 CDS=1-498 |
HORVU6Hr1G011910.26 | 1093 | gene=HORVU6Hr1G011910 CDS=305-460 |
HORVU6Hr1G011910.27 | 1063 | gene=HORVU6Hr1G011910 CDS=3-182 |
HORVU6Hr1G011910.28 | 1809 | gene=HORVU6Hr1G011910 CDS=1279-1809 |
HORVU6Hr1G011910.29 | 2311 | gene=HORVU6Hr1G011910 CDS=1278-2021 |
HORVU6Hr1G011910.30 | 1275 | gene=HORVU6Hr1G011910 CDS=2-985 |
HORVU6Hr1G011910.31 | 1578 | gene=HORVU6Hr1G011910 CDS=616-1326 |
HORVU6Hr1G011910.32 | 1771 | gene=HORVU6Hr1G011910 CDS=754-1497 |
HORVU6Hr1G011910.33 | 2085 | gene=HORVU6Hr1G011910 CDS=1124-1834 |
HORVU6Hr1G011910.34 | 3458 | gene=HORVU6Hr1G011910 CDS=1232-1675 |
HORVU6Hr1G011910.35 | 1481 | gene=HORVU6Hr1G011910 CDS=203-646 |
Exon Structure of HORVU6Hr1G011910
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g03040.2 | +3 | 2e-62 | 144 | 95/125 (76%) | protein|RNA recognition motif containing protein, expressed |
TAIR PP10 | AT5G52040 @ ARAPORT AT5G52040.3 @ TAIR |
+2 | 2e-33 | 100 | 45/56 (80%) | Symbols: RS41, At-RS41 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21131791-21133318 FORWARD LENGTH=329 |
BRACH PP3 | Bradi3g02226.1.p | +3 | 1e-68 | 155 | 108/117 (92%) | pacid=32814082 transcript=Bradi3g02226.1 locus=Bradi3g02226 ID=Bradi3g02226.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons