Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU5Hr1G121310	94.8	+	+	6483	-354	Containing

Transcripts from Gene BART1_0-u41201

Transcript	Length(bp)	Description
BART1_0-u41201.001	2500	2500 bp MSTRG.41201.1 MSTRG.41201
BART1_0-u41201.002	2503	2503 bp MSTRG.41201.2 MSTRG.41201
BART1_0-u41201.003	1997	1997 bp MSTRG.41201.3 MSTRG.41201
BART1_0-u41201.004	2009	2009 bp MSTRG.41201.4 MSTRG.41201
BART1_0-u41201.005	3493	3493 bp MSTRG.41201.5 MSTRG.41201
BART1_0-u41201.006	2351	2351 bp MSTRG.41201.6 MSTRG.41201
BART1_0-u41201.007	1847	1847 bp MSTRG.41201.7 MSTRG.41201
BART1_0-u41201.008	3210	3210 bp MSTRG.41201.8 MSTRG.41201
BART1_0-u41201.009	2984	2984 bp MSTRG.41201.9 MSTRG.41201

Exon Structure of BART1_0-u41201

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g63300.1	+1	4e-116	369	191/218 (88%)	protein|NLI interacting factor-like phosphatase, putative, expressed
TAIR PP10	AT5G11860 @ ARAPORT AT5G11860.4 @ TAIR	+1	7e-81	267	149/192 (78%)	Symbols: | SCP1-like small phosphatase 5 | chr5:3822024-3823395 REVERSE LENGTH=305
BRACH PP3	Bradi4g02010.1.p	+1	3e-125	391	203/223 (91%)	pacid=32785818 transcript=Bradi4g02010.1 locus=Bradi4g02010 ID=Bradi4g02010.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0140096	catalytic activity, acting on a protein
GO:0009055	electron transfer activity
GO:0006464	cellular protein modification process
GO:0022900	electron transport chain
GO:0000775	chromosome, centromeric region
GO:0005634	nucleus
GO:0005524	ATP binding
GO:0005737	cytoplasm
GO:0016791	phosphatase activity
GO:0016021	integral component of membrane
GO:0016310	phosphorylation
GO:0016311	dephosphorylation
GO:0016773	phosphotransferase activity, alcohol group as acceptor
GO:0051536	iron-sulfur cluster binding
GO:0016301	kinase activity

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons