Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u41201	94.8	+	+	6483	-354	Containing

Transcripts from Gene HORVU5Hr1G121310

Transcript	Length(bp)	Description
HORVU5Hr1G121310.1	2005	gene=HORVU5Hr1G121310 CDS=335-1585
HORVU5Hr1G121310.2	2141	gene=HORVU5Hr1G121310 CDS=468-1715
HORVU5Hr1G121310.3	2144	gene=HORVU5Hr1G121310 CDS=468-1718
HORVU5Hr1G121310.4	889	gene=HORVU5Hr1G121310 CDS=126-887
HORVU5Hr1G121310.5	1422	gene=HORVU5Hr1G121310 CDS=219-1001

Exon Structure of HORVU5Hr1G121310

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g63300.1	+3	0.0	587	326/446 (73%)	protein|NLI interacting factor-like phosphatase, putative, expressed
TAIR PP10	AT5G11860 @ ARAPORT AT5G11860.4 @ TAIR	+3	2e-116	352	196/254 (77%)	Symbols: | SCP1-like small phosphatase 5 | chr5:3822024-3823395 REVERSE LENGTH=305
BRACH PP3	Bradi4g02010.1.p	+3	0.0	673	355/411 (86%)	pacid=32785818 transcript=Bradi4g02010.1 locus=Bradi4g02010 ID=Bradi4g02010.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons