- Gene BART1_0-u35917
- Gene IDBART1_0-u35917
- Location chr5H: 428280640 - 428284821
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU5Hr1G054500 | 91.8 | + | + | 3837 | -345 | Containing |
Transcripts from Gene BART1_0-u35917
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u35917.001 | 1995 | 1995 bp MSTRG.35917.1 MSTRG.35917 |
| BART1_0-u35917.002 | 1976 | 1976 bp MSTRG.35917.2 MSTRG.35917 |
| BART1_0-u35917.003 | 1945 | 1945 bp MSTRG.35917.3 MSTRG.35917 |
| BART1_0-u35917.004 | 1776 | 1776 bp MSTRG.35917.4 MSTRG.35917 |
| BART1_0-u35917.005 | 1749 | 1749 bp MSTRG.35917.5 MSTRG.35917 |
| BART1_0-u35917.006 | 1563 | 1563 bp MSTRG.35917.6 MSTRG.35917 |
| BART1_0-u35917.007 | 1530 | 1530 bp MSTRG.35917.7 MSTRG.35917 |
| BART1_0-u35917.008 | 1476 | 1476 bp MSTRG.35917.8 MSTRG.35917 |
Exon Structure of BART1_0-u35917
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g12800.1 | +1 | 1e-132 | 399 | 268/315 (85%) | protein|zinc finger Ran-binding domain-containing protein 2, putative, expressed |
| TAIR PP10 | AT1G50300 @ ARAPORT AT1G50300.1 @ TAIR |
+1 | 2e-100 | 312 | 220/314 (70%) | Symbols: TAF15 | TBP-associated factor 15 | chr1:18628818-18631662 REVERSE LENGTH=372 |
| BRACH PP3 | Bradi1g19280.1.p | +1 | 2e-140 | 416 | 286/314 (91%) | pacid=32805605 transcript=Bradi1g19280.1 locus=Bradi1g19280 ID=Bradi1g19280.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0016887 | ATPase activity |
| GO:0016779 | nucleotidyltransferase activity |
| GO:0090079 | translation regulator activity, nucleic acid binding |
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0006298 | mismatch repair |
| GO:0006413 | translational initiation |
| GO:0005634 | nucleus |
| GO:0005524 | ATP binding |
| GO:0003723 | RNA binding |
| GO:0046872 | metal ion binding |
| GO:0032300 | mismatch repair complex |
| GO:0016021 | integral component of membrane |
| GO:0030983 | mismatched DNA binding |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons