Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u3591791.8++3837-345Containing




Transcripts from Gene HORVU5Hr1G054500

TranscriptLength(bp)Description
HORVU5Hr1G054500.11626gene=HORVU5Hr1G054500 CDS=724-1494
HORVU5Hr1G054500.21623gene=HORVU5Hr1G054500 CDS=724-1491
HORVU5Hr1G054500.31196gene=HORVU5Hr1G054500 CDS=863-1195
HORVU5Hr1G054500.41607gene=HORVU5Hr1G054500 CDS=622-1356
HORVU5Hr1G054500.51594gene=HORVU5Hr1G054500 CDS=168-1343
HORVU5Hr1G054500.61285gene=HORVU5Hr1G054500 CDS=683-1285
HORVU5Hr1G054500.71168gene=HORVU5Hr1G054500 CDS=842-1168
HORVU5Hr1G054500.81524gene=HORVU5Hr1G054500 CDS=160-1332
HORVU5Hr1G054500.91562gene=HORVU5Hr1G054500 CDS=614-1351
HORVU5Hr1G054500.101557gene=HORVU5Hr1G054500 CDS=825-1346
HORVU5Hr1G054500.111253gene=HORVU5Hr1G054500 CDS=150-644
HORVU5Hr1G054500.121134gene=HORVU5Hr1G054500 CDS=145-627
HORVU5Hr1G054500.131484gene=HORVU5Hr1G054500 CDS=607-1377
HORVU5Hr1G054500.141237gene=HORVU5Hr1G054500 CDS=89-583
HORVU5Hr1G054500.151164gene=HORVU5Hr1G054500 CDS=80-973
HORVU5Hr1G054500.161259gene=HORVU5Hr1G054500 CDS=760-1002
HORVU5Hr1G054500.171568gene=HORVU5Hr1G054500 CDS=60-554
HORVU5Hr1G054500.181179gene=HORVU5Hr1G054500 CDS=1-1179
HORVU5Hr1G054500.19437gene=HORVU5Hr1G054500 CDS=90-362



Exon Structure of HORVU5Hr1G054500


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os09g12800.1 +2 4e-81 262 133/164 (81%) protein|zinc finger Ran-binding domain-containing protein 2, putative, expressed
TAIR PP10 AT1G50300 @ ARAPORT
AT1G50300.1 @ TAIR		 +2 7e-57 194 106/164 (65%) Symbols: TAF15 | TBP-associated factor 15 | chr1:18628818-18631662 REVERSE LENGTH=372
BRACH PP3 Bradi1g19280.1.p +2 2e-84 268 140/164 (85%) pacid=32805605 transcript=Bradi1g19280.1 locus=Bradi1g19280 ID=Bradi1g19280.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons