Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU5Hr1G019300	99.8	+	+	13127	32766	Partial-Overlap

Transcripts from Gene BART1_0-u33573

Transcript	Length(bp)	Description
BART1_0-u33573.001	2813	2813 bp MSTRG.33573.1 MSTRG.33573
BART1_0-u33573.002	1115	1115 bp MSTRG.33573.2 MSTRG.33573
BART1_0-u33573.003	1949	1949 bp MSTRG.33573.3 MSTRG.33573
BART1_0-u33573.004	1366	1366 bp MSTRG.33573.4 MSTRG.33573
BART1_0-u33573.005	459	459 bp MSTRG.33573.5 MSTRG.33573

Exon Structure of BART1_0-u33573

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g38740.1	+1	2e-109	370	177/244 (73%)	protein|Dicer, putative, expressed
TAIR PP10	AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR	+1	1e-75	271	136/247 (55%)	Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388
BRACH PP3	Bradi1g15440.3.p	+1	1e-136	436	205/256 (80%)	pacid=32792175 transcript=Bradi1g15440.3 locus=Bradi1g15440 ID=Bradi1g15440.3.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0010492	maintenance of shoot apical meristem identity
GO:0048608	reproductive structure development
GO:0090079	translation regulator activity, nucleic acid binding
GO:0010050	vegetative phase change
GO:0006396	RNA processing
GO:0004386	helicase activity
GO:0006353	DNA-templated transcription, termination
GO:0009944	polarity specification of adaxial/abaxial axis
GO:0005634	nucleus
GO:0005524	ATP binding
GO:0051214	RNA virus induced gene silencing
GO:0003677	DNA binding
GO:0006415	translational termination
GO:0004525	ribonuclease III activity
GO:0003723	RNA binding
GO:0005737	cytoplasm
GO:0046872	metal ion binding
GO:0016021	integral component of membrane
GO:0031047	gene silencing by RNA
GO:0016441	posttranscriptional gene silencing
GO:0016442	RISC complex
GO:0010216	maintenance of DNA methylation

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons