- Gene HORVU5Hr1G019300
- Gene IDHORVU5Hr1G019300
- Location chr5H: 84450117 - 84496031
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u33573 | 99.8 | + | + | 13127 | 32766 | Partial-Overlap |
| BART1_0-u33637 | 99.5 | + | + | 32071 | 13676 | Partial-Overlap |
Transcripts from Gene HORVU5Hr1G019300
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU5Hr1G019300.1 | 4614 | gene=HORVU5Hr1G019300 CDS=2367-4061 |
| HORVU5Hr1G019300.2 | 2256 | gene=HORVU5Hr1G019300 CDS=1-918 |
| HORVU5Hr1G019300.3 | 5024 | gene=HORVU5Hr1G019300 CDS=2660-4666 |
| HORVU5Hr1G019300.4 | 5626 | gene=HORVU5Hr1G019300 CDS=2599-5331 |
| HORVU5Hr1G019300.5 | 4791 | gene=HORVU5Hr1G019300 CDS=838-4479 |
| HORVU5Hr1G019300.6 | 3116 | gene=HORVU5Hr1G019300 CDS=2-2065 |
| HORVU5Hr1G019300.7 | 4977 | gene=HORVU5Hr1G019300 CDS=2529-4535 |
| HORVU5Hr1G019300.8 | 4871 | gene=HORVU5Hr1G019300 CDS=2-4429 |
| HORVU5Hr1G019300.9 | 4702 | gene=HORVU5Hr1G019300 CDS=2-4423 |
| HORVU5Hr1G019300.10 | 4702 | gene=HORVU5Hr1G019300 CDS=2-4423 |
| HORVU5Hr1G019300.11 | 4887 | gene=HORVU5Hr1G019300 CDS=1021-4590 |
| HORVU5Hr1G019300.12 | 7441 | gene=HORVU5Hr1G019300 CDS=2-2032 |
| HORVU5Hr1G019300.13 | 3671 | gene=HORVU5Hr1G019300 CDS=1386-3671 |
| HORVU5Hr1G019300.14 | 4165 | gene=HORVU5Hr1G019300 CDS=2150-4159 |
| HORVU5Hr1G019300.15 | 4447 | gene=HORVU5Hr1G019300 CDS=430-4134 |
| HORVU5Hr1G019300.16 | 4551 | gene=HORVU5Hr1G019300 CDS=2232-4238 |
| HORVU5Hr1G019300.17 | 4091 | gene=HORVU5Hr1G019300 CDS=1798-3804 |
| HORVU5Hr1G019300.18 | 1102 | gene=HORVU5Hr1G019300 CDS=246-1100 |
| HORVU5Hr1G019300.19 | 3903 | gene=HORVU5Hr1G019300 CDS=1495-3501 |
| HORVU5Hr1G019300.20 | 3453 | gene=HORVU5Hr1G019300 CDS=1430-3436 |
| HORVU5Hr1G019300.21 | 1599 | gene=HORVU5Hr1G019300 CDS=1-1599 |
| HORVU5Hr1G019300.22 | 3479 | gene=HORVU5Hr1G019300 CDS=1158-3164 |
| HORVU5Hr1G019300.23 | 1750 | gene=HORVU5Hr1G019300 CDS=2-1447 |
| HORVU5Hr1G019300.24 | 905 | gene=HORVU5Hr1G019300 CDS=85-507 |
Exon Structure of HORVU5Hr1G019300
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +2 | 0.0 | 1949 | 966/1388 (70%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+2 | 0.0 | 1046 | 598/1374 (44%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.1.p | +2 | 0.0 | 2127 | 1059/1397 (76%) | pacid=32792173 transcript=Bradi1g15440.1 locus=Bradi1g15440 ID=Bradi1g15440.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons