Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU3Hr1G109960	100.0	+	+	9304	119739	Partial-Overlap

Transcripts from Gene BART1_0-u25305

Transcript	Length(bp)	Description
BART1_0-u25305.001	2584	2584 bp MSTRG.25305.1 MSTRG.25305
BART1_0-u25305.002	1935	1935 bp MSTRG.25305.2 MSTRG.25305

Exon Structure of BART1_0-u25305

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os01g68810.1	+1	0.0	1188	580/684 (85%)	protein|expressed protein
TAIR PP10	AT1G24706 @ ARAPORT AT1G24706.2 @ TAIR	+1	0.0	858	428/673 (64%)	Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823
BRACH PP3	Bradi2g58697.2.p	+1	0.0	1289	617/655 (94%)	pacid=32780756 transcript=Bradi2g58697.2 locus=Bradi2g58697 ID=Bradi2g58697.2.v3.1 annot-version=v3.1

GO Annotation

There is no GO annotation for this gene

Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons