Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u25304100.2.+648128397Contained
BART1_0-u2533199.4++9777119208Partial-Overlap
BART1_0-u25305100.0++9304119739Partial-Overlap




Transcripts from Gene HORVU3Hr1G109960

TranscriptLength(bp)Description
HORVU3Hr1G109960.16307gene=HORVU3Hr1G109960 CDS=311-5740
HORVU3Hr1G109960.26374gene=HORVU3Hr1G109960 CDS=901-5751
HORVU3Hr1G109960.36263gene=HORVU3Hr1G109960 CDS=901-5640
HORVU3Hr1G109960.45849gene=HORVU3Hr1G109960 CDS=218-5536
HORVU3Hr1G109960.56100gene=HORVU3Hr1G109960 CDS=1174-5634
HORVU3Hr1G109960.66174gene=HORVU3Hr1G109960 CDS=204-5708
HORVU3Hr1G109960.76373gene=HORVU3Hr1G109960 CDS=611-5731
HORVU3Hr1G109960.86145gene=HORVU3Hr1G109960 CDS=1061-5521
HORVU3Hr1G109960.96233gene=HORVU3Hr1G109960 CDS=1981-3810
HORVU3Hr1G109960.106122gene=HORVU3Hr1G109960 CDS=180-5504
HORVU3Hr1G109960.116224gene=HORVU3Hr1G109960 CDS=174-3758
HORVU3Hr1G109960.121890gene=HORVU3Hr1G109960 CDS=1-1890
HORVU3Hr1G109960.132289gene=HORVU3Hr1G109960 CDS=1-2166
HORVU3Hr1G109960.145043gene=HORVU3Hr1G109960 CDS=1220-4459
HORVU3Hr1G109960.155322gene=HORVU3Hr1G109960 CDS=1-4692
HORVU3Hr1G109960.165434gene=HORVU3Hr1G109960 CDS=1051-4782
HORVU3Hr1G109960.175212gene=HORVU3Hr1G109960 CDS=1-4617
HORVU3Hr1G109960.185340gene=HORVU3Hr1G109960 CDS=1-2715
HORVU3Hr1G109960.195921gene=HORVU3Hr1G109960 CDS=820-5280
HORVU3Hr1G109960.205921gene=HORVU3Hr1G109960 CDS=820-5280
HORVU3Hr1G109960.213450gene=HORVU3Hr1G109960 CDS=1-3450



Exon Structure of HORVU3Hr1G109960


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g68810.1 +1 0.0 2796 1478/1898 (78%) protein|expressed protein
TAIR PP10None-----
BRACH PP3 Bradi2g58697.1.p +1 0.0 3201 1631/1843 (88%) pacid=32780755 transcript=Bradi2g58697.1 locus=Bradi2g58697 ID=Bradi2g58697.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons