Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU2Hr1G040400	100.0	+	+	3493	369	Contained

Transcripts from Gene BART1_0-u10054

Transcript	Length(bp)	Description
BART1_0-u10054.001	1334	1334 bp MSTRG.10054.1 MSTRG.10054
BART1_0-u10054.002	1352	1352 bp MSTRG.10054.2 MSTRG.10054

Exon Structure of BART1_0-u10054

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os07g37610.1	+3	0.0	559	287/396 (72%)	protein|B3 DNA binding domain containing protein, putative, expressed
TAIR PP10	AT4G32010 @ ARAPORT AT4G32010.1 @ TAIR	+3	1e-74	248	117/154 (76%)	Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780
BRACH PP3	Bradi1g24720.3.p	+3	0.0	618	312/406 (77%)	pacid=32795971 transcript=Bradi1g24720.3 locus=Bradi1g24720 ID=Bradi1g24720.3.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0005634	nucleus
GO:0003677	DNA binding
GO:0008270	zinc ion binding

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons