- Gene HORVU2Hr1G040400
- Gene IDHORVU2Hr1G040400
- Location chr2H: 196024300 - 196028161
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
BART1_0-u10054 | 100.0 | + | + | 3493 | 369 | Contained |
Transcripts from Gene HORVU2Hr1G040400
Transcript | Length(bp) | Description |
---|---|---|
HORVU2Hr1G040400.1 | 1496 | gene=HORVU2Hr1G040400 CDS=231-1496 |
Exon Structure of HORVU2Hr1G040400
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os07g37610.1 | +3 | 0.0 | 561 | 287/396 (72%) | protein|B3 DNA binding domain containing protein, putative, expressed |
TAIR PP10 | AT4G32010 @ ARAPORT AT4G32010.1 @ TAIR |
+3 | 1e-74 | 250 | 117/151 (77%) | Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780 |
BRACH PP3 | Bradi1g24720.3.p | +3 | 0.0 | 620 | 317/432 (73%) | pacid=32795971 transcript=Bradi1g24720.3 locus=Bradi1g24720 ID=Bradi1g24720.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons