Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u10054100.0++3493369Contained




Transcripts from Gene HORVU2Hr1G040400

TranscriptLength(bp)Description
HORVU2Hr1G040400.11496gene=HORVU2Hr1G040400 CDS=231-1496



Exon Structure of HORVU2Hr1G040400


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os07g37610.1 +3 0.0 561 287/396 (72%) protein|B3 DNA binding domain containing protein, putative, expressed
TAIR PP10 AT4G32010 @ ARAPORT
AT4G32010.1 @ TAIR
+3 1e-74 250 117/151 (77%) Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780
BRACH PP3 Bradi1g24720.3.p +3 0.0 620 317/432 (73%) pacid=32795971 transcript=Bradi1g24720.3 locus=Bradi1g24720 ID=Bradi1g24720.3.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons