- Gene BART1_0-u05387
- Gene IDBART1_0-u05387
- Location chr1H: 519177851 - 519180460
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU1Hr1G078110 | 91.2 | - | - | 2380 | -230 | Containing |
Transcripts from Gene BART1_0-u05387
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u05387.001 | 1720 | 1720 bp MSTRG.5387.1 MSTRG.5387 |
BART1_0-u05387.002 | 1487 | 1487 bp MSTRG.5387.2 MSTRG.5387 |
Exon Structure of BART1_0-u05387
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os05g43582.1 | +2 | 2e-118 | 352 | 167/195 (86%) | protein|tRNA methyltran, putative, expressed |
TAIR PP10 | AT1G16445 @ ARAPORT AT1G16445.1 @ TAIR |
+2 | 3e-83 | 261 | 122/197 (62%) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:5617811-5619303 FORWARD LENGTH=274 |
BRACH PP3 | Bradi2g20250.1.p | +2 | 3e-135 | 394 | 202/220 (92%) | pacid=32772093 transcript=Bradi2g20250.1 locus=Bradi2g20250 ID=Bradi2g20250.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0009507 | chloroplast |
GO:0016021 | integral component of membrane |
GO:0008168 | methyltransferase activity |
GO:0032259 | methylation |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons