Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u0538791.2--2380-230Containing




Transcripts from Gene HORVU1Hr1G078110

TranscriptLength(bp)Description
HORVU1Hr1G078110.1618gene=HORVU1Hr1G078110 CDS=3-131
HORVU1Hr1G078110.21219gene=HORVU1Hr1G078110 CDS=2-805
HORVU1Hr1G078110.31359gene=HORVU1Hr1G078110 CDS=389-574
HORVU1Hr1G078110.41393gene=HORVU1Hr1G078110 CDS=546-1007
HORVU1Hr1G078110.51389gene=HORVU1Hr1G078110 CDS=224-1003
HORVU1Hr1G078110.6991gene=HORVU1Hr1G078110 CDS=160-621
HORVU1Hr1G078110.71153gene=HORVU1Hr1G078110 CDS=2-802
HORVU1Hr1G078110.81164gene=HORVU1Hr1G078110 CDS=1-819
HORVU1Hr1G078110.91274gene=HORVU1Hr1G078110 CDS=471-932
HORVU1Hr1G078110.101175gene=HORVU1Hr1G078110 CDS=388-849
HORVU1Hr1G078110.111074gene=HORVU1Hr1G078110 CDS=1-765
HORVU1Hr1G078110.121080gene=HORVU1Hr1G078110 CDS=308-706
HORVU1Hr1G078110.131210gene=HORVU1Hr1G078110 CDS=1-525
HORVU1Hr1G078110.14812gene=HORVU1Hr1G078110 CDS=154-543
HORVU1Hr1G078110.15222gene=HORVU1Hr1G078110 CDS=1-222
HORVU1Hr1G078110.16810gene=HORVU1Hr1G078110 CDS=1-810
HORVU1Hr1G078110.17826gene=HORVU1Hr1G078110 CDS=3-566



Exon Structure of HORVU1Hr1G078110


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os05g43582.1 +3 2e-105 315 150/177 (85%) protein|tRNA methyltran, putative, expressed
TAIR PP10 AT1G16445 @ ARAPORT
AT1G16445.1 @ TAIR
+3 1e-74 236 112/179 (63%) Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:5617811-5619303 FORWARD LENGTH=274
BRACH PP3 Bradi2g20250.1.p +3 2e-116 343 165/177 (93%) pacid=32772093 transcript=Bradi2g20250.1 locus=Bradi2g20250 ID=Bradi2g20250.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons