- Gene HORVU1Hr1G078110
- Gene IDHORVU1Hr1G078110
- Location chr1H: 519178081 - 519180460
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
BART1_0-u05387 | 91.2 | - | - | 2380 | -230 | Containing |
Transcripts from Gene HORVU1Hr1G078110
Transcript | Length(bp) | Description |
---|---|---|
HORVU1Hr1G078110.1 | 618 | gene=HORVU1Hr1G078110 CDS=3-131 |
HORVU1Hr1G078110.2 | 1219 | gene=HORVU1Hr1G078110 CDS=2-805 |
HORVU1Hr1G078110.3 | 1359 | gene=HORVU1Hr1G078110 CDS=389-574 |
HORVU1Hr1G078110.4 | 1393 | gene=HORVU1Hr1G078110 CDS=546-1007 |
HORVU1Hr1G078110.5 | 1389 | gene=HORVU1Hr1G078110 CDS=224-1003 |
HORVU1Hr1G078110.6 | 991 | gene=HORVU1Hr1G078110 CDS=160-621 |
HORVU1Hr1G078110.7 | 1153 | gene=HORVU1Hr1G078110 CDS=2-802 |
HORVU1Hr1G078110.8 | 1164 | gene=HORVU1Hr1G078110 CDS=1-819 |
HORVU1Hr1G078110.9 | 1274 | gene=HORVU1Hr1G078110 CDS=471-932 |
HORVU1Hr1G078110.10 | 1175 | gene=HORVU1Hr1G078110 CDS=388-849 |
HORVU1Hr1G078110.11 | 1074 | gene=HORVU1Hr1G078110 CDS=1-765 |
HORVU1Hr1G078110.12 | 1080 | gene=HORVU1Hr1G078110 CDS=308-706 |
HORVU1Hr1G078110.13 | 1210 | gene=HORVU1Hr1G078110 CDS=1-525 |
HORVU1Hr1G078110.14 | 812 | gene=HORVU1Hr1G078110 CDS=154-543 |
HORVU1Hr1G078110.15 | 222 | gene=HORVU1Hr1G078110 CDS=1-222 |
HORVU1Hr1G078110.16 | 810 | gene=HORVU1Hr1G078110 CDS=1-810 |
HORVU1Hr1G078110.17 | 826 | gene=HORVU1Hr1G078110 CDS=3-566 |
Exon Structure of HORVU1Hr1G078110
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os05g43582.1 | +3 | 2e-105 | 315 | 150/177 (85%) | protein|tRNA methyltran, putative, expressed |
TAIR PP10 | AT1G16445 @ ARAPORT AT1G16445.1 @ TAIR |
+3 | 1e-74 | 236 | 112/179 (63%) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:5617811-5619303 FORWARD LENGTH=274 |
BRACH PP3 | Bradi2g20250.1.p | +3 | 2e-116 | 343 | 165/177 (93%) | pacid=32772093 transcript=Bradi2g20250.1 locus=Bradi2g20250 ID=Bradi2g20250.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons