Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G106780.9

ChromosomeExonStartStopDirection
chr7H1620784789620784725+
chr7H2620785405620785279+
chr7H3620786382620785866+
chr7H4620786624620786494+
chr7H5620787144620786727+
chr7H6620788394620787261+
chr7H7620788805620788653+
chr7H8620789164620788920+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g46240.1 +1 0.0 546 279/414 (67%) protein|BTB/POZ domain containing protein, putative, expressed
TAIR PP10 AT1G04390 @ ARAPORT
AT1G04390.1 @ TAIR		 +3 1e-56 210 116/284 (41%) Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849
BRACH PP3 Bradi1g32690.2.p +3 0.0 780 418/546 (77%) pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2790 bp)

>HORVU7Hr1G106780.9 2790 150831_barley_pseudomolecules
CTCACCGACCGCGTCCTCTCCCTCCGCGCACGCCTGCACGACGCCCTCTCCCTCGGCCTC
GCCAGGTCTGATGGCCACGGTGCAAAAAAATGGCAGTCTACTGATGCTGGAATTCAGTCT
CACGCGATCAAAGCAGTGACTGCTTTTCTCGGTTGTTTGTCAACTGAAATGCTGCGGCTT
CCTCCTATAAAGGAGTCAATTTCGGATATTCTCGTACTCTTGGAAGGTGTTCTTCAGACA
AAGAACGTTTCAGTTCTGATCCAAGCAGCAGATGTGAGCTCAAAGTTAGTTTCCAGCATA
GGCAATTCGATTCGGCAATACTCAATTTTGGAGATTGTTTCGCCCCTCTCATGCCAGTTG
TCGGCACACCAGTTACCTACGGCTATCTCATGTGCAAGGGCAATAAACTGCATATTGAAT
AGCCTAGTGACAGCGAGAGGTTCAACTCATGCAGAAATTTTGGAAACCTTGGAGAGAACC
AATGCAGTTGCTAGTATTGTTTCAGCTCTGCAGAGTTACACTCTTGATGTCCATCCACTG
AGTTATCTGACCGAGATGATATCACTGCTAAGAACCATACTGTGGACTTGGCCTTCCTCA
AGATACCATGTATGGAGTAACGGCGACCTGATGGGGAAGTTAGCACATTACTGTCTTGCC
ACTGAAACAACGGTTGTAGCTAAAGTTCTGAGGCTGTATGCTGCTTTAGCTTTATGTGGC
CATGGAGCTACGATCCTTCTCAAGAATGAAGTCTTAATGGCTAAGATTTGTGAGCTTGTG
GGGACGTCCCATCCGACTAGTACTAGGATTGAAGCGTTCAAACTCTGCCATGTTCTTTTG
AGATCTTCGAAGGGCTGTAGTCAGTTAATGACTTCACGTTGCCAGCCTATTGTTGAAGGC
ATAATCGATGCAATGCGTGCAAAGGATGATAAATTGTTAGTAACAGAGGGGTGTCGTACT
GCACTGGTGGTCCTCCGTTATGCTGGGAATCATCATCAATGCTTTTGGTCTAATGCCATT
GATAAAGTATTATATACCATTCTTACGGGCCGCTGCCTCTCCTCGCATCAAAGTGATCAA
GTTTTGTGCGATGATGAGCTATTTGATATGGTTTCCAAAAACTTCATGGATATACATCCA
TACGTCTGGGATATACTTGGATATCTAGTGGTGCATTGCACTGACAAGCACCATCCTGTA
AGGAAAGGGAAAGGTCATAGCTTGCACGCACTGATATCTTGTGCTTGGTAGGTACTAGCT
TGCTGGCCACAGATGTTATGCGCAAAAGCAGCCCCATGAAATTGTCCAAAGATGTGCAGG
AGCCGGCTTTGAGAGCAGTTCTGATGATGCTTCTCTCTCCCAATGGATATATTCAGTATG
AGGCAAGTTTTAAACTTTCAGAAGGTCTTCCGTATTTGGGTGATGGCTATTTGAACGTTC
TATTGTCATCATTAGAATCAAATGCTACGAGAAGTGTTGCCACATCTTTTGACAGTTTCA
AAATTATGACCAACCTCATGAACCTAGCATGTTTGGTGCTGTCACGACCTTACCATAATC
TCCTGAACAAGAGGAATCCTATAGATGTGTTGTCCACCATTATCAAGGAATCTCTCCACA
ATCATATACATATTACGAGGTCAAAAGTCACTTCCCATCTGCATTTTTGTTTTGATGGAA
GTTCATGCTGTTGCTATCTCGGTGAAGAGTGGGAGGGTGAAAACATAGTTTTATTCTACG
GTCTTGTTGTGCTGTTTAATCTTATGAGGAGCACTACTTTAGTTTGTGTTCAGTGTAAGA
GGAAGTTGGATGTTGGAAATCTGTGCCATGACTGCAGAGATCAATATACAGAAGATTTTC
TTATAGTTCTTCAACATGCTCTAAGTCAAAGCTTGAGTTCTGGACCGAAGCTCTATATTG
CACACATCCTGAGTTTGTTTGGCCTCTGTGGTTCTCCAAGCAAGTTGGGCGGGAAGATGA
CTAGTGCATTAGATAATAACGATCTAGCTGATCTGGAACTTTTGCTTTCAGATGGTGAAT
CTCTAAATGCTCACACAGCCATCATATCAGCGAGGTGTCCTAAGCTGTTGCCATCTGTAA
AATATCTACTTGGCAGCGATGAAAAAGTTAAAGATGAATGGGGAAAATCAGTGTACCGAG
TTCAGATGTCTGATCGTGTAGATAGTCGCGCCTTGAAGAAGATTTTGGAGTACACATATA
CTGGTTTTCTGATGGTAGGCGATGACGTTGTTAAACCAGTAAGGACACTTGCGAAGTATT
GTCACCTGAAACCATTGGCAGAAATGCTTCAGAAAGAGCAACCCAGATGGAACTCCGATT
ATGCCAGATATGATCTTAGTGCTGCACTTGGACCTGTTGAGCATTCATTCTCGGATATAA
TTTTGGAGGCTAGGTCAAATGAGGAAATGAATTGTCACCATGGGTCGTGCCAATTGTCAA
CCCCGCACGTTCATAGCCATAAAATCGTGCTGACCATGAGCTGCGATTACCTCCGGGCAT
TATTTCGATCCGGGATGCATGAGAGCTTCTCCGACGTTATCAGGGTTCCGCTCGGGTGGC
AAGCGCTGGACAAGCTGGCTCACTGGTTCTACTCGGGCGAGCTGCCGAAAGCCGCCGTCG
ACTGCCGATGGAACAACCTGGGCAGCGACGAGCAGCGCGCCCACCTGAACGCCTACGCGG
AGCTGTCGTCCCTGTCCGAGTTCTGGTTCCTGGAGGGGGTGAAGGAGGAGAGCCTCGTCG
CGGCGTCGTCCCTCCTGGAGTCGAGCACGA