- Transcript HORVU7Hr1G106780.6
- Transcript IDHORVU7Hr1G106780.6
- Gene IDHORVU7Hr1G106780
Barley RTD
Exon Structure of HORVU7Hr1G106780.6
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 620784789 | 620784714 | + |
| chr7H | 2 | 620785405 | 620785279 | + |
| chr7H | 3 | 620786382 | 620785866 | + |
| chr7H | 4 | 620786624 | 620786494 | + |
| chr7H | 5 | 620787133 | 620786727 | + |
| chr7H | 6 | 620788394 | 620787261 | + |
| chr7H | 7 | 620789615 | 620788653 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g46240.1 | +3 | 0.0 | 662 | 344/514 (67%) | protein|BTB/POZ domain containing protein, putative, expressed |
| TAIR PP10 | AT1G04390 @ ARAPORT AT1G04390.1 @ TAIR |
+3 | 8e-63 | 230 | 144/400 (36%) | Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849 |
| BRACH PP3 | Bradi1g32690.2.p | +3 | 0.0 | 1495 | 780/1030 (76%) | pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3355 bp)
>HORVU7Hr1G106780.6 3355 150831_barley_pseudomolecules GGGAGCATCTCCTCACCGACCGCGTCCTCTCCCTCCGCGCACGCCTGCACGACGCCCTCT CCCTCGGCCTCGCCAGGTCTGATGGCCACGGTGCAAAAAAATGGCAGTCTACTGATGCTG GAATTCAGTCTCACGCGATCAAAGCAGTGACTGCTTTTCTCGGTTGTTTGTCAACTGAAA TGCTGCGGCTTCCTCCTATAAAGGAGTCAATTTCGGATATTCTCGTACTCTTGGAAGGTG TTCTTCAGACAAAGAACGTTTCAGTTCTGATCCAAGCAGCAGATGTGAGCTCAAAGTTAG TTTCCAGCATAGGCAATTCGATTCGGCAATACTCAATTTTGGAGATTGTTTCGCCCCTCT CATGCCAGTTGTCGGCACACCAGTTACCTACGGCTATCTCATGTGCAAGGGCAATAAACT GCATATTGAATAGCCTAGTGACAGCGAGAGGTTCAACTCATGCAGAAATTTTGGAAACCT TGGAGAGAACCAATGCAGTTGCTAGTATTGTTTCAGCTCTGCAGAGTTACACTCTTGATG TCCATCCACTGAGTTATCTGACCGAGATGATATCACTGCTAAGAACCATACTGTGGACTT GGCCTTCCTCAAGATACCATGTATGGAGTAACGGCGACCTGATGGGGAAGTTAGCACATT ACTGTCTTGCCACTGAAACAACGGTTGTAGCTAAAGTTCTGAGGCTGTATGCTGCTTTAG CTTTATGTGGCCATGGAGCTACGATCCTTCTCAAGAATGAAGTCTTAATGGCTAAGATTT GTGAGCTTGTGGGGACGTCCCATCCGACTAGTACTAGGATTGAAGCGTTCAAACTCTGCC ATGTTCTTTTGAGATCTTCGAAGGGCTGTAGTCAGTTAATGACTTCACGTTGCCAGCCTA TTGTTGAAGGCATAATCGATGCAATGCGTGCAAAGGATGATAAATTGTTAGTAACAGAGG GGTGTCGTACTGCACTGGTGGTCCTCCGTTATGCTGGGAATCATCATCAATGCTTTTGGT CTAATGCCATTGATAAAGTATTATATACCATTCTTACGGGCCGCTGCCTCTCCTCGCATC AAAGTGATCAAGTTTTGTGCGATGATGAGCTATTTGATATGGTTTCCAAAAACTTCATGG ATATACATCCATACGTCTGGGATATACTTGGATATCTAGTGGTGCATTGCACTGACAAGC ACCATCCTGTAAGGAAAGGGAAAGGTCATAGCTTGCACGCACTGATATCTTGTGCTTGCT TGCTGGCCACAGATGTTATGCGCAAAAGCAGCCCCATGAAATTGTCCAAAGATGTGCAGG AGCCGGCTTTGAGAGCAGTTCTGATGATGCTTCTCTCTCCCAATGGATATATTCAGTATG AGGCAAGTTTTAAACTTTCAGAAGGTCTTCCGTATTTGGGTGATGGCTATTTGAACGTTC TATTGTCATCATTAGAATCAAATGCTACGAGAAGTGTTGCCACATCTTTTGACAGTTTCA AAATTATGACCAACCTCATGAACCTAGCATGTTTGGTGCTGTCACGACCTTACCATAATC TCCTGAACAAGAGGAATCCTATAGATGTGTTGTCCACCATTATCAAGGAATCTCTCCACA ATCATATACATATTACGAGGTCAAAAGTCACTTCCCATCTGCATTTTTGTTTTGATGGAA GTTCATGCTGTTGCTATCTCGGTGAAGAGTGGGAGGGTGAAAACATAGTTTTATTCTACG GTCTTGTTGTGCTGTTTAATCTTATGAGGAGCACTACTTTAGTTTGTGTTCAGTGTAAGA GGAAGTTGGATGTTGGAAATCTGTGCCATGACTGCAGAGATCAATATACAGAAGATTTTC TTATAGTTCTTCAACATGCTCTAAGTCAAAGCTTGAGTTCTGGACCGAAGCTCTATATTG CACACATCCTGAGTTTGTTTGGCCTCTGTGGTTCTCCAAGCAAGTTGGGCGGGAAGATGA CTAGTGCATTAGATAATAACGATCTAGCTGATCTGGAACTTTTGCTTTCAGATGGTGAAT CTCTAAATGCTCACACAGCCATCATATCAGCGAGGTGTCCTAAGCTGTTGCCATCTGTAA AATATCTACTTGGCAGCGATGAAAAAGTTAAAGATGAATGGGGAAAATCAGTGTACCGAG TTCAGATGTCTGATCGTGTAGATAGTCGCGCCTTGAAGAAGATTTTGGAGTACACATATA CTGGTTTTCTGATGGTAGGCGATGACGTTGTTAAACCAGTAAGGACACTTGCGAAGTATT GTCACCTGAAACCATTGGCAGAAATGCTTCAGAAAGAGCAACCCAGATGGAACTCCGATT ATGCCAGATATGATCTTAGTGCTGCACTTGGACCTGTTGAGCATTCATTCTCGGATATAA TTTTGGAGGCTAGGTCAAATGAGGAAATGAATTGTCACCATGGGTCGTGCCAATTGTCAA CCCCGCACGTTCATAGCCATAAAATCGTGCTGACCATGAGCTGCGATTACCTCCGGGCAT TATTTCGATCCGGGATGCATGAGAGGTGAGCCTTTTGATCCTTCCTATAATGCAACAAAG TACAGACGGTTTATGCCAACATTTCCACAAATGGTATTCGATGCGTGCTTCATGCGTCTG ACGAGAACCACGCCTGCAGCTTCTCCGACGTTATCAGGGTTCCGCTCGGGTGGCAAGCGC TGGACAAGCTGGCTCACTGGTTCTACTCGGGCGAGCTGCCGAAAGCCGCCGTCGACTGCC GATGGAACAACCTGGGCAGCGACGAGCAGCGCGCCCACCTGAACGCCTACGCGGAGCTGT CGTCCCTGTCCGAGTTCTGGTTCCTGGAGGGGGTGAAGGAGGAGAGCCTCGTCGCGGCGT CGTCCCTCCTGGAGTCGAGCACGAGCGCCGCCGCGGTCGGGTTCGTCGCCTTCGCGGCCA GCCTGGGCCAGTGGGAGATGGTGGACGCCGGCGTCCGGAGCGTGGCGCACCTGTACCCCC GGCTCCGGGACTCCGGCGGGCTGGAGCGGCTCGACGACGAGCTGCTCAACATGCTGCGCA CCGAGTACGTCCGCTACTCGCAGCACGGAGGCAGGCAGAGGTGACTGAATGATACGTACG TACATGGGGGACCTGAATGCGCGTCGCCGTGCGCTATGTAGATCCCCCCCCAGGGATTGC TGCCATGCTTTCTTCACAGAGAATAATGTGCAATGTAAGTAGTAGCATTATCGTCTGGGT TGCCAGAGCGGAGAGCTGTTTGTTGCTCCTGCCTGCATGGCGCACATGGTCACGCGCAAA GGTGCAGGTATCGGAGGACCGACCGGCCTGCTGACACGCACACGCCGCGCCGATC