- Transcript HORVU7Hr1G106780.3
- Transcript IDHORVU7Hr1G106780.3
- Gene IDHORVU7Hr1G106780
Barley RTD
Exon Structure of HORVU7Hr1G106780.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 620784789 | 620784700 | + |
| chr7H | 2 | 620785405 | 620785279 | + |
| chr7H | 3 | 620786382 | 620785866 | + |
| chr7H | 4 | 620786624 | 620786494 | + |
| chr7H | 5 | 620787133 | 620786727 | + |
| chr7H | 6 | 620787384 | 620787261 | + |
| chr7H | 7 | 620788394 | 620787785 | + |
| chr7H | 8 | 620789631 | 620788653 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g46240.1 | +2 | 0.0 | 610 | 313/460 (68%) | protein|BTB/POZ domain containing protein, putative, expressed |
| TAIR PP10 | AT1G04390 @ ARAPORT AT1G04390.1 @ TAIR |
+1 | 7e-63 | 229 | 144/400 (36%) | Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849 |
| BRACH PP3 | Bradi1g32690.2.p | +2 | 0.0 | 719 | 359/459 (78%) | pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2985 bp)
>HORVU7Hr1G106780.3 2985 150831_barley_pseudomolecules CGGCGCCGGCGCCGGGGAGCATCTCCTCACCGACCGCGTCCTCTCCCTCCGCGCACGCCT GCACGACGCCCTCTCCCTCGGCCTCGCCAGGTCTGATGGCCACGGTGCAAAAAAATGGCA GTCTACTGATGCTGGAATTCAGTCTCACGCGATCAAAGCAGTGACTGCTTTTCTCGGTTG TTTGTCAACTGAAATGCTGCGGCTTCCTCCTATAAAGGAGTCAATTTCGGATATTCTCGT ACTCTTGGAAGGTGTTCTTCAGACAAAGAACGTTTCAGTTCTGATCCAAGCAGCAGATGT GAGCTCAAAGTTAGTTTCCAGCATAGGCAATTCGATTCGGCAATACTCAATTTTGGAGAT TGTTTCGCCCCTCTCATGCCAGTTGTCGGCACACCAGTTACCTACGGCTATCTCATGTGC AAGGGCAATAAACTGCATATTGAATAGCCTAGTGACAGCGAGAGGTTCAACTCATGCAGA AATTTTGGAAACCTTGGAGAGAACCAATGCAGTTGCTAGTATTGTTTCAGCTCTGCAGAG TTACACTCTTGATGTCCATCCACTGAGTTATCTGACCGAGATGATATCACTGCTAAGAAC CATACTGTGGACTTGGCCTTCCTCAAGATACCATGTATGGAGTAACGGCGACCTGATGGG GAAGTTAGCACATTACTGTCTTGCCACTGAAACAACGGTTGTAGCTAAAGTTCTGAGGCT GTATGCTGCTTTAGCTTTATGTGGCCATGGAGCTACGATCCTTCTCAAGAATGAAGTCTT AATGGCTAAGATTTGTGAGCTTGTGGGGACGTCCCATCCGACTAGTACTAGGATTGAAGC GTTCAAACTCTGCCATGTTCTTTTGAGATCTTCGAAGGGCTGTAGTCAGTTAATGACTTC ACGTTGCCAGCCTATTGTTGAAGGCATAATCGATGCAATGCGTGCAAAGGATGATAAATT GTTAGTAACAGAGGGGTGTCGTACTGCACTGGTGGTCCTCCGTTATGCTGGGAATCATCA TCAATGCTTTTGGTCTAATGCCATTGATAAAGTATTATATACCATTCTTACGGGCCGCTG CCTCTCCTCGCATCAAAGTGATCAAGTTTTGTGCGATGATGAGCTATTTGATATGGTTTC CAAAAACTTCATGGATATACATCCATACGTCTGGGATATACTTGGATATCTAGTGGTGCA TTGCACTGACAAGCACCATCCTGTAAGGAAAGGGAAAGGTCATAGCTTGCACGCACTGAT ATCTTGTGCTTGCTTGCTGGCCACAGATGTTATGCGCAAAAGCAGCCCCATGAAATTGTC CAAAGATGTGCAGGAGCCGGCTTTGAGAGCAGTTCTGATGATGCTTCTCTCTCCCAATGG ATATATTCAGTATGAGTTTGTGTTCAGTGTAAGAGGAAGTTGGATGTTGGAAATCTGTGC CATGACTGCAGAGATCAATATACAGAAGATTTTCTTATAGTTCTTCAACATGCTCTAAGT CAAAGCTTGAGTTCTGGACCGAAGCTCTATATTGCACACATCCTGAGTTTGTTTGGCCTC TGTGGTTCTCCAAGCAAGTTGGGCGGGAAGATGACTAGTGCATTAGATAATAACGATCTA GCTGATCTGGAACTTTTGCTTTCAGATGGTGAATCTCTAAATGCTCACACAGCCATCATA TCAGCGAGGTGTCCTAAGCTGTTGCCATCTGTAAAATATCTACTTGGCAGCGATGAAAAA GTTAAAGATGAATGGGGAAAATCAGTGTACCGAGTTCAGATGTCTGATCGTGTAGATAGT CGCGCCTTGAAGAAGATTTTGGAGTACACATATACTGGTTTTCTGATGGTAGGCGATGAC GTTGTTAAACCAGTAAGGACACTTGCGAAGTATTGTCACCTGAAACCATTGGCAGAAATG CTTCAGAAAGAGCAACCCAGATGGAACTCCGATTATGCCAGATATGATCTTAGTGCTGCA CTTGGACCTGTTGAGCATTCATTCTCGGATATAATTTTGGAGGCTAGGTCAAATGAGGAA ATGAATTGTCACCATGGGTCGTGCCAATTGTCAACCCCGCACGTTCATAGCCATAAAATC GTGCTGACCATGAGCTGCGATTACCTCCGGGCATTATTTCGATCCGGGATGCATGAGAGG TGAGCCTTTTGATCCTTCCTATAATGCAACAAAGTACAGACGGTTTATGCCAACATTTCC ACAAATGGTATTCGATGCGTGCTTCATGCGTCTGACGAGAACCACGCCTGCAGCTTCTCC GACGTTATCAGGGTTCCGCTCGGGTGGCAAGCGCTGGACAAGCTGGCTCACTGGTTCTAC TCGGGCGAGCTGCCGAAAGCCGCCGTCGACTGCCGATGGAACAACCTGGGCAGCGACGAG CAGCGCGCCCACCTGAACGCCTACGCGGAGCTGTCGTCCCTGTCCGAGTTCTGGTTCCTG GAGGGGGTGAAGGAGGAGAGCCTCGTCGCGGCGTCGTCCCTCCTGGAGTCGAGCACGAGC GCCGCCGCGGTCGGGTTCGTCGCCTTCGCGGCCAGCCTGGGCCAGTGGGAGATGGTGGAC GCCGGCGTCCGGAGCGTGGCGCACCTGTACCCCCGGCTCCGGGACTCCGGCGGGCTGGAG CGGCTCGACGACGAGCTGCTCAACATGCTGCGCACCGAGTACGTCCGCTACTCGCAGCAC GGAGGCAGGCAGAGGTGACTGAATGATACGTACGTACATGGGGGACCTGAATGCGCGTCG CCGTGCGCTATGTAGATCCCCCCCCAGGGATTGCTGCCATGCTTTCTTCACAGAGAATAA TGTGCAATGTAAGTAGTAGCATTATCGTCTGGGTTGCCAGAGCGGAGAGCTGTTTGTTGC TCCTGCCTGCATGGCGCACATGGTCACGCGCAAAGGTGCAGGTATCGGAGGACCGACCGG CCTGCTGACACGCACACGCCGCGCCGATCCATCGCCACGCGCATC