- Transcript HORVU7Hr1G106780.2
- Transcript IDHORVU7Hr1G106780.2
- Gene IDHORVU7Hr1G106780
Barley RTD
Exon Structure of HORVU7Hr1G106780.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 620784534 | 620784487 | + |
| chr7H | 2 | 620784789 | 620784698 | + |
| chr7H | 3 | 620785405 | 620785279 | + |
| chr7H | 4 | 620786382 | 620785866 | + |
| chr7H | 5 | 620786624 | 620786494 | + |
| chr7H | 6 | 620787133 | 620786727 | + |
| chr7H | 7 | 620788394 | 620787261 | + |
| chr7H | 8 | 620788805 | 620788653 | + |
| chr7H | 9 | 620789364 | 620788920 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g46240.1 | +1 | 0.0 | 658 | 343/513 (67%) | protein|BTB/POZ domain containing protein, putative, expressed |
| TAIR PP10 | AT1G04390 @ ARAPORT AT1G04390.1 @ TAIR |
+1 | 1e-69 | 249 | 145/362 (40%) | Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849 |
| BRACH PP3 | Bradi1g32690.2.p | +1 | 0.0 | 1512 | 780/992 (79%) | pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3054 bp)
>HORVU7Hr1G106780.2 3054 150831_barley_pseudomolecules ATGCGCCCCGCGGCCGGGAAGGAGAAGGGCAGGAGGAAGGGCGGCGGCGCCGGCGCCGGC GCCGGGGAGCATCTCCTCACCGACCGCGTCCTCTCCCTCCGCGCACGCCTGCACGACGCC CTCTCCCTCGGCCTCGCCAGGTCTGATGGCCACGGTGCAAAAAAATGGCAGTCTACTGAT GCTGGAATTCAGTCTCACGCGATCAAAGCAGTGACTGCTTTTCTCGGTTGTTTGTCAACT GAAATGCTGCGGCTTCCTCCTATAAAGGAGTCAATTTCGGATATTCTCGTACTCTTGGAA GGTGTTCTTCAGACAAAGAACGTTTCAGTTCTGATCCAAGCAGCAGATGTGAGCTCAAAG TTAGTTTCCAGCATAGGCAATTCGATTCGGCAATACTCAATTTTGGAGATTGTTTCGCCC CTCTCATGCCAGTTGTCGGCACACCAGTTACCTACGGCTATCTCATGTGCAAGGGCAATA AACTGCATATTGAATAGCCTAGTGACAGCGAGAGGTTCAACTCATGCAGAAATTTTGGAA ACCTTGGAGAGAACCAATGCAGTTGCTAGTATTGTTTCAGCTCTGCAGAGTTACACTCTT GATGTCCATCCACTGAGTTATCTGACCGAGATGATATCACTGCTAAGAACCATACTGTGG ACTTGGCCTTCCTCAAGATACCATGTATGGAGTAACGGCGACCTGATGGGGAAGTTAGCA CATTACTGTCTTGCCACTGAAACAACGGTTGTAGCTAAAGTTCTGAGGCTGTATGCTGCT TTAGCTTTATGTGGCCATGGAGCTACGATCCTTCTCAAGAATGAAGTCTTAATGGCTAAG ATTTGTGAGCTTGTGGGGACGTCCCATCCGACTAGTACTAGGATTGAAGCGTTCAAACTC TGCCATGTTCTTTTGAGATCTTCGAAGGGCTGTAGTCAGTTAATGACTTCACGTTGCCAG CCTATTGTTGAAGGCATAATCGATGCAATGCGTGCAAAGGATGATAAATTGTTAGTAACA GAGGGGTGTCGTACTGCACTGGTGGTCCTCCGTTATGCTGGGAATCATCATCAATGCTTT TGGTCTAATGCCATTGATAAAGTATTATATACCATTCTTACGGGCCGCTGCCTCTCCTCG CATCAAAGTGATCAAGTTTTGTGCGATGATGAGCTATTTGATATGGTTTCCAAAAACTTC ATGGATATACATCCATACGTCTGGGATATACTTGGATATCTAGTGGTGCATTGCACTGAC AAGCACCATCCTGTAAGGAAAGGGAAAGGTCATAGCTTGCACGCACTGATATCTTGTGCT TGCTTGCTGGCCACAGATGTTATGCGCAAAAGCAGCCCCATGAAATTGTCCAAAGATGTG CAGGAGCCGGCTTTGAGAGCAGTTCTGATGATGCTTCTCTCTCCCAATGGATATATTCAG TATGAGGCAAGTTTTAAACTTTCAGAAGGTCTTCCGTATTTGGGTGATGGCTATTTGAAC GTTCTATTGTCATCATTAGAATCAAATGCTACGAGAAGTGTTGCCACATCTTTTGACAGT TTCAAAATTATGACCAACCTCATGAACCTAGCATGTTTGGTGCTGTCACGACCTTACCAT AATCTCCTGAACAAGAGGAATCCTATAGATGTGTTGTCCACCATTATCAAGGAATCTCTC CACAATCATATACATATTACGAGGTCAAAAGTCACTTCCCATCTGCATTTTTGTTTTGAT GGAAGTTCATGCTGTTGCTATCTCGGTGAAGAGTGGGAGGGTGAAAACATAGTTTTATTC TACGGTCTTGTTGTGCTGTTTAATCTTATGAGGAGCACTACTTTAGTTTGTGTTCAGTGT AAGAGGAAGTTGGATGTTGGAAATCTGTGCCATGACTGCAGAGATCAATATACAGAAGAT TTTCTTATAGTTCTTCAACATGCTCTAAGTCAAAGCTTGAGTTCTGGACCGAAGCTCTAT ATTGCACACATCCTGAGTTTGTTTGGCCTCTGTGGTTCTCCAAGCAAGTTGGGCGGGAAG ATGACTAGTGCATTAGATAATAACGATCTAGCTGATCTGGAACTTTTGCTTTCAGATGGT GAATCTCTAAATGCTCACACAGCCATCATATCAGCGAGGTGTCCTAAGCTGTTGCCATCT GTAAAATATCTACTTGGCAGCGATGAAAAAGTTAAAGATGAATGGGGAAAATCAGTGTAC CGAGTTCAGATGTCTGATCGTGTAGATAGTCGCGCCTTGAAGAAGATTTTGGAGTACACA TATACTGGTTTTCTGATGGTAGGCGATGACGTTGTTAAACCAGTAAGGACACTTGCGAAG TATTGTCACCTGAAACCATTGGCAGAAATGCTTCAGAAAGAGCAACCCAGATGGAACTCC GATTATGCCAGATATGATCTTAGTGCTGCACTTGGACCTGTTGAGCATTCATTCTCGGAT ATAATTTTGGAGGCTAGGTCAAATGAGGAAATGAATTGTCACCATGGGTCGTGCCAATTG TCAACCCCGCACGTTCATAGCCATAAAATCGTGCTGACCATGAGCTGCGATTACCTCCGG GCATTATTTCGATCCGGGATGCATGAGAGCTTCTCCGACGTTATCAGGGTTCCGCTCGGG TGGCAAGCGCTGGACAAGCTGGCTCACTGGTTCTACTCGGGCGAGCTGCCGAAAGCCGCC GTCGACTGCCGATGGAACAACCTGGGCAGCGACGAGCAGCGCGCCCACCTGAACGCCTAC GCGGAGCTGTCGTCCCTGTCCGAGTTCTGGTTCCTGGAGGGGGTGAAGGAGGAGAGCCTC GTCGCGGCGTCGTCCCTCCTGGAGTCGAGCACGAGCGCCGCCGCGGTCGGGTTCGTCGCC TTCGCGGCCAGCCTGGGCCAGTGGGAGATGGTGGACGCCGGCGTCCGGAGCGTGGCGCAC CTGTACCCCCGGCTCCGGGACTCCGGCGGGCTGGAGCGGCTCGACGACGAGCTGCTCAAC ATGCTGCGCACCGAGTACGTCCGCTACTCGCAGCACGGAGGCAGGCAGAGGTGA