Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G106780.14

ChromosomeExonStartStopDirection
chr7H1620785633620785568+
chr7H2620786382620785866+
chr7H3620786624620786494+
chr7H4620787133620786727+
chr7H5620787641620787261+
chr7H6620788394620787840+
chr7H7620788805620788653+
chr7H8620789364620788920+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g46240.1 +1 0.0 961 539/859 (63%) protein|BTB/POZ domain containing protein, putative, expressed
TAIR PP10 AT1G04390 @ ARAPORT
AT1G04390.1 @ TAIR		 +1 3e-70 249 145/362 (40%) Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849
BRACH PP3 Bradi1g32690.2.p +1 0.0 726 374/483 (77%) pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2655 bp)

>HORVU7Hr1G106780.14 2655 150831_barley_pseudomolecules
CGTTGTAATAAGCCACTACTAAGACAAAGCCTTTGTTGCGTTTCTCAGTTTTTTAAAAAG
AGTTCCGAGTCAATTTCGGATATTCTCGTACTCTTGGAAGGTGTTCTTCAGACAAAGAAC
GTTTCAGTTCTGATCCAAGCAGCAGATGTGAGCTCAAAGTTAGTTTCCAGCATAGGCAAT
TCGATTCGGCAATACTCAATTTTGGAGATTGTTTCGCCCCTCTCATGCCAGTTGTCGGCA
CACCAGTTACCTACGGCTATCTCATGTGCAAGGGCAATAAACTGCATATTGAATAGCCTA
GTGACAGCGAGAGGTTCAACTCATGCAGAAATTTTGGAAACCTTGGAGAGAACCAATGCA
GTTGCTAGTATTGTTTCAGCTCTGCAGAGTTACACTCTTGATGTCCATCCACTGAGTTAT
CTGACCGAGATGATATCACTGCTAAGAACCATACTGTGGACTTGGCCTTCCTCAAGATAC
CATGTATGGAGTAACGGCGACCTGATGGGGAAGTTAGCACATTACTGTCTTGCCACTGAA
ACAACGGTTGTAGCTAAAGTTCTGAGGCTGTATGCTGCTTTAGCTTTATGTGGCCATGGA
GCTACGATCCTTCTCAAGAATGAAGTCTTAATGGCTAAGATTTGTGAGCTTGTGGGGACG
TCCCATCCGACTAGTACTAGGATTGAAGCGTTCAAACTCTGCCATGTTCTTTTGAGATCT
TCGAAGGGCTGTAGTCAGTTAATGACTTCACGTTGCCAGCCTATTGTTGAAGGCATAATC
GATGCAATGCGTGCAAAGGATGATAAATTGTTAGTAACAGAGGGGTGTCGTACTGCACTG
GTGGTCCTCCGTTATGCTGGGAATCATCATCAATGCTTTTGGTCTAATGCCATTGATAAA
GTATTATATACCATTCTTACGGGCCGCTGCCTCTCCTCGCATCAAAGTGATCAAGTTTTG
TGCGATGATGAGCTATTTGATATGGTTTCCAAAAACTTCATGGATATACATCCATACGTC
TGGGATATACTTGGATATCTAGTGGTGCATTGCACTGACAAGCACCATCCTGTAAGGAAA
GGGAAAGGTCATAGCTTGCACGCACTGATATCTTGTGCTTGCTTGCTGGCCACAGATGTT
ATGCGCAAAAGCAGCCCCATGAAATTGTCCAAAGATGTGCAGGAGCCGGCTTTGAGAGCA
GTTCTGATGATGCTTCTCTCTCCCAATGGATATATTCAGTATGAGGCAAGTTTTAAACTT
TCAGAAGGTCTTCCGTATTTGGGTGATGGCTATTTGAACGTTCTATTGTCATCATTAGAA
TCAAATGCTACGAGAAGTGTTGCCACATCTTTTGACAGTTTCAAAATTATGACCAACCTC
ATGAACCTAGCATGTTTGGTGCTGTCACGACCTTACCATAATCTCCTGAACAAGAGGAAT
CCTATAGATGTGTTGTCCACCATTATCAAGGAATCTCTCCACAATCATATACATATTACG
AGAGATCAATATACAGAAGATTTTCTTATAGTTCTTCAACATGCTCTAAGTCAAAGCTTG
AGTTCTGGACCGAAGCTCTATATTGCACACATCCTGAGTTTGTTTGGCCTCTGTGGTTCT
CCAAGCAAGTTGGGCGGGAAGATGACTAGTGCATTAGATAATAACGATCTAGCTGATCTG
GAACTTTTGCTTTCAGATGGTGAATCTCTAAATGCTCACACAGCCATCATATCAGCGAGG
TGTCCTAAGCTGTTGCCATCTGTAAAATATCTACTTGGCAGCGATGAAAAAGTTAAAGAT
GAATGGGGAAAATCAGTGTACCGAGTTCAGATGTCTGATCGTGTAGATAGTCGCGCCTTG
AAGAAGATTTTGGAGTACACATATACTGGTTTTCTGATGGTAGGCGATGACGTTGTTAAA
CCAGTAAGGACACTTGCGAAGTATTGTCACCTGAAACCATTGGCAGAAATGCTTCAGAAA
GAGCAACCCAGATGGAACTCCGATTATGCCAGATATGATCTTAGTGCTGCACTTGGACCT
GTTGAGCATTCATTCTCGGATATAATTTTGGAGGCTAGGTCAAATGAGGAAATGAATTGT
CACCATGGGTCGTGCCAATTGTCAACCCCGCACGTTCATAGCCATAAAATCGTGCTGACC
ATGAGCTGCGATTACCTCCGGGCATTATTTCGATCCGGGATGCATGAGAGCTTCTCCGAC
GTTATCAGGGTTCCGCTCGGGTGGCAAGCGCTGGACAAGCTGGCTCACTGGTTCTACTCG
GGCGAGCTGCCGAAAGCCGCCGTCGACTGCCGATGGAACAACCTGGGCAGCGACGAGCAG
CGCGCCCACCTGAACGCCTACGCGGAGCTGTCGTCCCTGTCCGAGTTCTGGTTCCTGGAG
GGGGTGAAGGAGGAGAGCCTCGTCGCGGCGTCGTCCCTCCTGGAGTCGAGCACGAGCGCC
GCCGCGGTCGGGTTCGTCGCCTTCGCGGCCAGCCTGGGCCAGTGGGAGATGGTGGACGCC
GGCGTCCGGAGCGTGGCGCACCTGTACCCCCGGCTCCGGGACTCCGGCGGGCTGGAGCGG
CTCGACGACGAGCTGCTCAACATGCTGCGCACCGAGTACGTCCGCTACTCGCAGCACGGA
GGCAGGCAGAGGTGA