Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G070870.6

ChromosomeExonStartStopDirection
chr7H1385862497385862030-
chr7H2385863972385862587-
chr7H3385864284385864078-
chr7H4385865991385865930-
chr7H5385866338385866227-
chr7H6385866611385866409-
chr7H7385867084385867000-
chr7H8385867258385867200-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g06110.2 +3 0.0 878 526/725 (73%) protein|MYB family transcription factor, putative, expressed
TAIR PP10 AT2G46830 @ ARAPORT
AT2G46830.1 @ TAIR		 +3 3e-38 152 71/91 (78%) Symbols: CCA1 | circadian clock associated 1 | chr2:19246005-19248717 FORWARD LENGTH=608
BRACH PP3 Bradi3g16515.1.p +3 0.0 936 559/722 (77%) pacid=32817815 transcript=Bradi3g16515.1 locus=Bradi3g16515 ID=Bradi3g16515.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2582 bp)

>HORVU7Hr1G070870.6 2582 150831_barley_pseudomolecules
CACTAATAACGTGGATTTTGTTGCTCTGGCAGGTCATGGGATTTGTTTGTCCTTAGCAGA
GTTGAAGATAAAGAGAGGAAGGCTAAACTCTGCTGATCCGGTTCATGCGAGCAATGAGCC
AACTGCAGTAGAGGTTTACAGTAGAGAGGTTTAGGGGGAGGTATGAGATACTACTCGCGT
CAGGTCCAGCGTTTGGCTGGAGACACAGAAGGAGGAGTGCTGTTGTTTGTAGACGCCCTC
AACTCCAAGTAACAAAGCGACCAGTTGTCAGCACTTCCTTTTGTTTTCGCATTTCCCTGG
AATTGGAGATGGAGATAAATTCTTCGGGTGAGGAAACGGTGATAAAGGTGCGAAAGCCGT
ACACAATAACAAAACAGCGGGAGCGGTGGACTGAGGCAGAGCACAAACGGTTCCTTGAAG
CCCTCAAACTGTATGGCAGAGCTTGGCAGCGCATAGAAGAGCATGTTGGGACAAAGACGG
CCGTGCAAATCAGAAGCCATGCTCAGAAGTTCTTCACAAAGTTGGAAAAGGAAGCTATCA
ACAATGGTACTTCTCCAGGACAAGCTCATGATATAGACATACCTCCACCACGGCCTAAAA
GAAAACCTAACTGTCCATATCCTCGAAAAGGTTGTCTCAGCTCTGAGACACCCACCAGAG
AAGTTCCAAAATCAAGTGTTAGCTTGAGCAATAGCAATTCACAAATGGAAAGCAATGGAA
CTCTTCAGGTCACCAGCACTCAGAAACTTCAAAGGAAGGAGTTGTCTGGAAACGGCAGTT
GCTCAGAAGTTATTAATATCTTTAGAGAAGCACCATCTGCCTCATTTTCTTCCTCTAACA
AGAGCTCTTCAAATCATGGTGTCTCTGGGGGAATTGAACCGACTAAAACAGAAATCAAAG
ATATGGCAGCCATGGAAAGGAAATCTACTTCCGTTGATGTGGCGAAGGATGTAAAAGATA
TTAATGACCAGGAAATGGAAAGGAACAACAGAGTCCACATCAGTTCTAAATATGACCGTT
CTCATGAAGATTGTTTGGATAGCTCAATGAAACACATGCAGTTGAAGCCAAATACTGTGG
AGACAACATACACGGGTCAACATGTTGCAAGTGCTCCACTCTACCAAATGAATAAGACTG
GGGCAACTGGCACTCCAGACCCTGGAACTGAAGGAAGTCATCCTGATCAAACGAATGATC
AAGTGGGAGGAGCTAATGGAAGTATGGACTGCATCCATCCAACACTTCCCGTGGATCTAA
AATTTGGCAGCAGCTCCACAGCGCAGCCCTTTCCCCACAACTATTCAGGCTTTGCACCAA
CGATGCAATGCCAGTGCAACCAAGATGCCTACAGGTCATCTGTTGATATGTCGTCCACCT
TCTCCAACATGCTCGTTTCCACATTGTTATCAAACCCCACAGTACATGCAGCTGCAAGGC
TTGCAGCATCATACTGGCCAGCAGCAGACAGCAACATCCCTGTCGATCCAAATCAAGGAA
TTTTTGCTCAGAATGCTCAAGGAAGACATATTGTTTCTCCTCCAAGCATGGCTTCTGTGG
TAGCAGCTACAGTTGCTGCGGCTTCGGCATGGTGGGCAACACAAGGTCTTCTCCCTCTTT
TTGCTCCCCCCATGGCTTTTCCATTTGTCCCAGTTCCTACCGCTTCCTTTCCCACAGCGG
ATGTCCAGCGAGCTACAGAGAACTGCCCAGTGGACAACGCACCAAAGGAATGCCAAGTAG
CTCAGGGGCAAGGTCAACCTGAAGCTATGATAGTTGTAGCATCTTCTGGGTCCGGCGAGA
GTGGAAAAGGAGAGGTGTGTCCTCACACTGAGTTAAATATATCTCTGGCTGATAAAGCTG
AGACAACACCTGCCACAGGAGCTGAAACAAGTGATGCTTTGGGCAACAAGAAGAAGCAGG
ATCGCTCTTCATGTGGTTCCAACACACCATCAAGTAGTGATGTAGAGGCAGAACATGTTC
CTGAGAACCAAGATCAAGCTAACGACAAGACACAGCAAGCATGTTGCAGTAATTCTTCAG
CTGGTGACATGAACCATCGCAGGTTTAGGAACATTTCAAGCACGAATGATTCATGGAAGG
AAGTTTCCGAGGAGGGTCGTATGGCTTTCGATAAACTGTTCAGTAGAGGAAAGCTTCCCC
AAAGCTTTTCTCCTCCACAAGCAGAAGGATTGAAGGTGGTTCCCAGAGGGGAGCAAGATG
AAGCTACTACGGTGACGGTCGACCTCAACAAGAGTGCTGCAGTTATGGACCATGAACTTG
ACACATTGGTTGGGCCAAGAGCTTCCTTTCCCATTGAATTGTCACACCTGAATATGAAAT
CCCGCCGGACAGGCTTCAAACCTTACAAGAGGTGCTCGGTGGAAGCAAAGGAGAATAGGG
TGCCGGCTGCTGACGAGGTTGGTACCAAAAGGATTCGCCTTGACAGCGAACCCTCCACGT
GATTTACTTCCCACGACATGATTACCAGCCTGCACAAGTAGTGTATTTTCAAGAAATTGC
GGTATTTACATCTAAGCTACTATAGGACTTGCCAGTCCTTGCAATGCAGTGTTTCACAGA
AC