Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u5370391.0--10538-1044Containing




Transcripts from Gene HORVU7Hr1G070870

TranscriptLength(bp)Description
HORVU7Hr1G070870.13008gene=HORVU7Hr1G070870 CDS=552-2705
HORVU7Hr1G070870.22935gene=HORVU7Hr1G070870 CDS=479-2632
HORVU7Hr1G070870.33593gene=HORVU7Hr1G070870 CDS=1235-3388
HORVU7Hr1G070870.42947gene=HORVU7Hr1G070870 CDS=589-2742
HORVU7Hr1G070870.52895gene=HORVU7Hr1G070870 CDS=586-2739
HORVU7Hr1G070870.62582gene=HORVU7Hr1G070870 CDS=309-2462
HORVU7Hr1G070870.73876gene=HORVU7Hr1G070870 CDS=1603-3756
HORVU7Hr1G070870.83859gene=HORVU7Hr1G070870 CDS=1586-3739
HORVU7Hr1G070870.92833gene=HORVU7Hr1G070870 CDS=606-2759
HORVU7Hr1G070870.102700gene=HORVU7Hr1G070870 CDS=511-2664
HORVU7Hr1G070870.112685gene=HORVU7Hr1G070870 CDS=496-2649
HORVU7Hr1G070870.122732gene=HORVU7Hr1G070870 CDS=952-2709
HORVU7Hr1G070870.133473gene=HORVU7Hr1G070870 CDS=1308-3461
HORVU7Hr1G070870.142702gene=HORVU7Hr1G070870 CDS=537-2690
HORVU7Hr1G070870.152694gene=HORVU7Hr1G070870 CDS=483-2336
HORVU7Hr1G070870.162705gene=HORVU7Hr1G070870 CDS=494-2347
HORVU7Hr1G070870.172596gene=HORVU7Hr1G070870 CDS=438-2291
HORVU7Hr1G070870.182608gene=HORVU7Hr1G070870 CDS=546-2606
HORVU7Hr1G070870.192600gene=HORVU7Hr1G070870 CDS=556-2598
HORVU7Hr1G070870.203492gene=HORVU7Hr1G070870 CDS=1460-3490
HORVU7Hr1G070870.212743gene=HORVU7Hr1G070870 CDS=1018-2475
HORVU7Hr1G070870.223576gene=HORVU7Hr1G070870 CDS=1455-3308
HORVU7Hr1G070870.233641gene=HORVU7Hr1G070870 CDS=1520-3373
HORVU7Hr1G070870.243405gene=HORVU7Hr1G070870 CDS=1306-3159
HORVU7Hr1G070870.252569gene=HORVU7Hr1G070870 CDS=470-2323
HORVU7Hr1G070870.262527gene=HORVU7Hr1G070870 CDS=540-2525
HORVU7Hr1G070870.272643gene=HORVU7Hr1G070870 CDS=579-2432
HORVU7Hr1G070870.282560gene=HORVU7Hr1G070870 CDS=609-2558
HORVU7Hr1G070870.292517gene=HORVU7Hr1G070870 CDS=566-2515
HORVU7Hr1G070870.303323gene=HORVU7Hr1G070870 CDS=1701-3158
HORVU7Hr1G070870.312580gene=HORVU7Hr1G070870 CDS=562-2415
HORVU7Hr1G070870.322284gene=HORVU7Hr1G070870 CDS=280-2133
HORVU7Hr1G070870.332538gene=HORVU7Hr1G070870 CDS=547-2400
HORVU7Hr1G070870.342540gene=HORVU7Hr1G070870 CDS=549-2402
HORVU7Hr1G070870.352551gene=HORVU7Hr1G070870 CDS=560-2413
HORVU7Hr1G070870.362312gene=HORVU7Hr1G070870 CDS=322-2175
HORVU7Hr1G070870.372611gene=HORVU7Hr1G070870 CDS=621-2474
HORVU7Hr1G070870.382528gene=HORVU7Hr1G070870 CDS=538-2391
HORVU7Hr1G070870.393427gene=HORVU7Hr1G070870 CDS=1438-3291



Exon Structure of HORVU7Hr1G070870


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g06110.2 +1 0.0 878 526/725 (73%) protein|MYB family transcription factor, putative, expressed
TAIR PP10 AT2G46830 @ ARAPORT
AT2G46830.1 @ TAIR		 +1 6e-38 152 71/91 (78%) Symbols: CCA1 | circadian clock associated 1 | chr2:19246005-19248717 FORWARD LENGTH=608
BRACH PP3 Bradi3g16515.1.p +1 0.0 936 559/722 (77%) pacid=32817815 transcript=Bradi3g16515.1 locus=Bradi3g16515 ID=Bradi3g16515.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons