- Transcript HORVU7Hr1G070870.5
- Transcript IDHORVU7Hr1G070870.5
- Gene IDHORVU7Hr1G070870
Barley RTD
Exon Structure of HORVU7Hr1G070870.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 385862497 | 385861994 | - |
| chr7H | 2 | 385863972 | 385862587 | - |
| chr7H | 3 | 385864284 | 385864078 | - |
| chr7H | 4 | 385865991 | 385865930 | - |
| chr7H | 5 | 385866338 | 385866227 | - |
| chr7H | 6 | 385866611 | 385866409 | - |
| chr7H | 7 | 385867084 | 385867000 | - |
| chr7H | 8 | 385867226 | 385867200 | - |
| chr7H | 9 | 385867533 | 385867389 | - |
| chr7H | 10 | 385871248 | 385871162 | - |
| chr7H | 11 | 385871361 | 385871331 | - |
| chr7H | 12 | 385872192 | 385872147 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06110.2 | +1 | 0.0 | 878 | 526/725 (73%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | AT2G46830 @ ARAPORT AT2G46830.1 @ TAIR |
+1 | 3e-38 | 152 | 71/91 (78%) | Symbols: CCA1 | circadian clock associated 1 | chr2:19246005-19248717 FORWARD LENGTH=608 |
| BRACH PP3 | Bradi3g16515.1.p | +1 | 0.0 | 936 | 559/722 (77%) | pacid=32817815 transcript=Bradi3g16515.1 locus=Bradi3g16515 ID=Bradi3g16515.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2895 bp)
>HORVU7Hr1G070870.5 2895 150831_barley_pseudomolecules CGGGCGACGTGGCCACCGGGGTCAGCTTGCTTGCTGCTCGCCCGAGAGCAATCCTAAAGC AACATATGCATATTCAGGCATACTATGTTGTCCTTAAATAACGTGGTTCAGGTTGTGGGA GATAAACTCATGGATGCTCCTTCAAAGGTATACTGTTAGTGGAGGTGTAGGAAGTGTTAA GGGGATACATAATCGGTTTTGAGCTGCGAGGCCCTGCATTTCTTCTGCCTGCTGTTTGAT TCACGGCCCACTCTTTTCCTTCTATCCATTCAAGCAAAGTACTGGAATTTCTGAGCCCAA TTTATTCAGGTCATGGGATTTGTTTGTCCTTAGCAGAGTTGAAGATAAAGAGAGGAAGGC TAAACTCTGCTGATCCGGTTCATGCGAGCAATGAGCCAACTGCAGTAGAGGTTTACAGTA GAGAGGTTTAGGGGGAGGTATGAGATACTACTCGCGTCAGGTCCAGCGTTTGGCTGGAGA CACAGAAGGAGGAGTGCTGTTGTTTGTAGACGCCCTCAACTCCAAGTAACAAAGCGACCA GTTGTCAGCACTTCCTTTTGTTTTCGCATTTCCCTGGAATTGGAGATGGAGATAAATTCT TCGGGTGAGGAAACGGTGATAAAGGTGCGAAAGCCGTACACAATAACAAAACAGCGGGAG CGGTGGACTGAGGCAGAGCACAAACGGTTCCTTGAAGCCCTCAAACTGTATGGCAGAGCT TGGCAGCGCATAGAAGAGCATGTTGGGACAAAGACGGCCGTGCAAATCAGAAGCCATGCT CAGAAGTTCTTCACAAAGTTGGAAAAGGAAGCTATCAACAATGGTACTTCTCCAGGACAA GCTCATGATATAGACATACCTCCACCACGGCCTAAAAGAAAACCTAACTGTCCATATCCT CGAAAAGGTTGTCTCAGCTCTGAGACACCCACCAGAGAAGTTCCAAAATCAAGTGTTAGC TTGAGCAATAGCAATTCACAAATGGAAAGCAATGGAACTCTTCAGGTCACCAGCACTCAG AAACTTCAAAGGAAGGAGTTGTCTGGAAACGGCAGTTGCTCAGAAGTTATTAATATCTTT AGAGAAGCACCATCTGCCTCATTTTCTTCCTCTAACAAGAGCTCTTCAAATCATGGTGTC TCTGGGGGAATTGAACCGACTAAAACAGAAATCAAAGATATGGCAGCCATGGAAAGGAAA TCTACTTCCGTTGATGTGGCGAAGGATGTAAAAGATATTAATGACCAGGAAATGGAAAGG AACAACAGAGTCCACATCAGTTCTAAATATGACCGTTCTCATGAAGATTGTTTGGATAGC TCAATGAAACACATGCAGTTGAAGCCAAATACTGTGGAGACAACATACACGGGTCAACAT GTTGCAAGTGCTCCACTCTACCAAATGAATAAGACTGGGGCAACTGGCACTCCAGACCCT GGAACTGAAGGAAGTCATCCTGATCAAACGAATGATCAAGTGGGAGGAGCTAATGGAAGT ATGGACTGCATCCATCCAACACTTCCCGTGGATCTAAAATTTGGCAGCAGCTCCACAGCG CAGCCCTTTCCCCACAACTATTCAGGCTTTGCACCAACGATGCAATGCCAGTGCAACCAA GATGCCTACAGGTCATCTGTTGATATGTCGTCCACCTTCTCCAACATGCTCGTTTCCACA TTGTTATCAAACCCCACAGTACATGCAGCTGCAAGGCTTGCAGCATCATACTGGCCAGCA GCAGACAGCAACATCCCTGTCGATCCAAATCAAGGAATTTTTGCTCAGAATGCTCAAGGA AGACATATTGTTTCTCCTCCAAGCATGGCTTCTGTGGTAGCAGCTACAGTTGCTGCGGCT TCGGCATGGTGGGCAACACAAGGTCTTCTCCCTCTTTTTGCTCCCCCCATGGCTTTTCCA TTTGTCCCAGTTCCTACCGCTTCCTTTCCCACAGCGGATGTCCAGCGAGCTACAGAGAAC TGCCCAGTGGACAACGCACCAAAGGAATGCCAAGTAGCTCAGGGGCAAGGTCAACCTGAA GCTATGATAGTTGTAGCATCTTCTGGGTCCGGCGAGAGTGGAAAAGGAGAGGTGTGTCCT CACACTGAGTTAAATATATCTCTGGCTGATAAAGCTGAGACAACACCTGCCACAGGAGCT GAAACAAGTGATGCTTTGGGCAACAAGAAGAAGCAGGATCGCTCTTCATGTGGTTCCAAC ACACCATCAAGTAGTGATGTAGAGGCAGAACATGTTCCTGAGAACCAAGATCAAGCTAAC GACAAGACACAGCAAGCATGTTGCAGTAATTCTTCAGCTGGTGACATGAACCATCGCAGG TTTAGGAACATTTCAAGCACGAATGATTCATGGAAGGAAGTTTCCGAGGAGGGTCGTATG GCTTTCGATAAACTGTTCAGTAGAGGAAAGCTTCCCCAAAGCTTTTCTCCTCCACAAGCA GAAGGATTGAAGGTGGTTCCCAGAGGGGAGCAAGATGAAGCTACTACGGTGACGGTCGAC CTCAACAAGAGTGCTGCAGTTATGGACCATGAACTTGACACATTGGTTGGGCCAAGAGCT TCCTTTCCCATTGAATTGTCACACCTGAATATGAAATCCCGCCGGACAGGCTTCAAACCT TACAAGAGGTGCTCGGTGGAAGCAAAGGAGAATAGGGTGCCGGCTGCTGACGAGGTTGGT ACCAAAAGGATTCGCCTTGACAGCGAACCCTCCACGTGATTTACTTCCCACGACATGATT ACCAGCCTGCACAAGTAGTGTATTTTCAAGAAATTGCGGTATTTACATCTAAGCTACTAT AGGACTTGCCAGTCCTTGCAATGCAGTGTTTCACAGAACTCAATTTGTTATGTGTTGTAT GTTAATGCTTGCCGA