- Transcript HORVU7Hr1G070870.20
- Transcript IDHORVU7Hr1G070870.20
- Gene IDHORVU7Hr1G070870
Barley RTD
Exon Structure of HORVU7Hr1G070870.20
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 385862497 | 385862271 | - |
| chr7H | 2 | 385863972 | 385862587 | - |
| chr7H | 3 | 385864284 | 385864078 | - |
| chr7H | 4 | 385865991 | 385865930 | - |
| chr7H | 5 | 385866338 | 385866227 | - |
| chr7H | 6 | 385866611 | 385866409 | - |
| chr7H | 7 | 385867084 | 385867000 | - |
| chr7H | 8 | 385867230 | 385867200 | - |
| chr7H | 9 | 385867533 | 385867389 | - |
| chr7H | 10 | 385871249 | 385871162 | - |
| chr7H | 11 | 385872276 | 385871331 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06110.2 | +2 | 0.0 | 801 | 488/684 (71%) | protein|MYB family transcription factor, putative, expressed |
| TAIR PP10 | AT2G46830 @ ARAPORT AT2G46830.1 @ TAIR |
+2 | 5e-38 | 152 | 71/91 (78%) | Symbols: CCA1 | circadian clock associated 1 | chr2:19246005-19248717 FORWARD LENGTH=608 |
| BRACH PP3 | Bradi3g16515.1.p | +2 | 0.0 | 857 | 520/681 (76%) | pacid=32817815 transcript=Bradi3g16515.1 locus=Bradi3g16515 ID=Bradi3g16515.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3492 bp)
>HORVU7Hr1G070870.20 3492 150831_barley_pseudomolecules CATGATGAACCGCTGGGCTGTTGATTTGATTTTATGCACGGGGTGGTGGCTTGGTGCAGG CCGCCGCGCGGAGGGCGGGCTGGGCGGGCGACGTGGCCACCGGGGTCAGCTTGCTTGCTG CTCGCCCGAGGTAACCTAGAACTAAGAACCATACAAGTTTCCAGAAATTCGTGCTTCCAC TGGACGACGCGATTGATATATACGCTCCCCTCGCAAGTCCGTTCCTAGGTGTGCTAGTTT GTCGACTGAAAACTGTGCAGCAAATGAGCCCACGCTTTTTTTTTTCTGTGCCTGGTCGGT CTCTGTGGTTGCAGTGTTTGATTCCCGTTGCTCTGCTCCAATGATCATGGTGCACAAGCT CAGAATTCTGAGCGCTTCAACTGCATCCTTTTTCTTGCTCTAGTTAGTCCTGTCCATTTT ACTGTGGCTAGGAATAAAATTAATAGTGATTCTATGGTCCAACTTCTTAGAAAACTGTAT GGTCGACTAGTAAACTTAGGTACGTGTTTTTTTATCTTGCTTTTTTAGCTTTCACGGGTT TGAGGTGTGCTTTTATCAGATCTCTGATCTAGTATGGTGTTGTTTGTGCTCTGAAGTTGT TTAAAAAGAACGTGTGTAAGTTAGGCTTCTGAGTTTGCTATGCAGGGAGAGAACAGCTTA TTTTTTTTATAAGCAGGTGAGTTAAGTTAATTTTGGATTTGCTATGCTGAAAAGAGAGCA GCTTGATCTAGTTTAACTAAGCAGGTGAAGTAATTTGACTAAAATAGATGCTATAGTGAA TCGTGCTAAGAAGAAAATATATTTTTTATCTGCTATCAAACATTCATGTTTTTTTTTGGT TGTTGTTATGTCAATATATTTGCTATGATAAAATATCGGGCTGGCTTAAATTCTACTGTT TGTTTCGGAAAGTTCAGCAATCCTAAAGCAACATATGCATATTCAGGGCATACTATGTTG TCCTTAAATAACGTGGTTCAGGTTGTGGGAGATAAACTCATGGATGCTCCTTCAAAGGTA TACTGTTAGTGGAGGTGTAGGAAGTGTTAAGGGGATACATAATCGGTTTTGAGCTGCGAG GCCCTGCATTTCTTCTGCCTGCTGTTTGATTCACGGCCCACTCTTTTCCTTCTATCCATT CAAGCAAAGTACTGGAATTTCTGAGCCCAATTTATTCAGGCAGGTCATGGGATTTGTTTG TCCTTAGCAGAGTTGAAGATAAAGAGAGGAAGGCTAAACTCTGCTGATCCGGTTCATGCG AGCAATGAGCCAACTGCAGTAGAGGTTTACAGTAGAGAGGTTTAGGGGGAGGTATGAGAT ACTACTCGCGTCAGGTCCAGCGTTTGGCTGGAGACACAGAAGGAGGAGTGCTGTTGTTTG TAGACGCCCTCAACTCCAAGTAACAAAGCGACCAGTTGTCAGCACTTCCTTTTGTTTTCG CATTTCCCTGGAATTGGAGATGGAGATAAATTCTTCGGGTGAGGAAACGGTGATAAAGGT GCGAAAGCCGTACACAATAACAAAACAGCGGGAGCGGTGGACTGAGGCAGAGCACAAACG GTTCCTTGAAGCCCTCAAACTGTATGGCAGAGCTTGGCAGCGCATAGAAGAGCATGTTGG GACAAAGACGGCCGTGCAAATCAGAAGCCATGCTCAGAAGTTCTTCACAAAGTTGGAAAA GGAAGCTATCAACAATGGTACTTCTCCAGGACAAGCTCATGATATAGACATACCTCCACC ACGGCCTAAAAGAAAACCTAACTGTCCATATCCTCGAAAAGGTTGTCTCAGCTCTGAGAC ACCCACCAGAGAAGTTCCAAAATCAAGTGTTAGCTTGAGCAATAGCAATTCACAAATGGA AAGCAATGGAACTCTTCAGGTCACCAGCACTCAGAAACTTCAAAGGAAGGAGTTGTCTGG AAACGGCAGTTGCTCAGAAGTTATTAATATCTTTAGAGAAGCACCATCTGCCTCATTTTC TTCCTCTAACAAGAGCTCTTCAAATCATGGTGTCTCTGGGGGAATTGAACCGACTAAAAC AGAAATCAAAGATATGGCAGCCATGGAAAGGAAATCTACTTCCGTTGATGTGGCGAAGGA TGTAAAAGATATTAATGACCAGGAAATGGAAAGGAACAACAGAGTCCACATCAGTTCTAA ATATGACCGTTCTCATGAAGATTGTTTGGATAGCTCAATGAAACACATGCAGTTGAAGCC AAATACTGTGGAGACAACATACACGGGTCAACATGTTGCAAGTGCTCCACTCTACCAAAT GAATAAGACTGGGGCAACTGGCACTCCAGACCCTGGAACTGAAGGAAGTCATCCTGATCA AACGAATGATCAAGTGGGAGGAGCTAATGGAAGTATGGACTGCATCCATCCAACACTTCC CGTGGATCTAAAATTTGGCAGCAGCTCCACAGCGCAGCCCTTTCCCCACAACTATTCAGG CTTTGCACCAACGATGCAATGCCAGTGCAACCAAGATGCCTACAGGTCATCTGTTGATAT GTCGTCCACCTTCTCCAACATGCTCGTTTCCACATTGTTATCAAACCCCACAGTACATGC AGCTGCAAGGCTTGCAGCATCATACTGGCCAGCAGCAGACAGCAACATCCCTGTCGATCC AAATCAAGGAATTTTTGCTCAGAATGCTCAAGGAAGACATATTGTTTCTCCTCCAAGCAT GGCTTCTGTGGTAGCAGCTACAGTTGCTGCGGCTTCGGCATGGTGGGCAACACAAGGTCT TCTCCCTCTTTTTGCTCCCCCCATGGCTTTTCCATTTGTCCCAGTTCCTACCGCTTCCTT TCCCACAGCGGATGTCCAGCGAGCTACAGAGAACTGCCCAGTGGACAACGCACCAAAGGA ATGCCAAGTAGCTCAGGGGCAAGGTCAACCTGAAGCTATGATAGTTGTAGCATCTTCTGG GTCCGGCGAGAGTGGAAAAGGAGAGGTGTGTCCTCACACTGAGTTAAATATATCTCTGGC TGATAAAGCTGAGACAACACCTGCCACAGGAGCTGAAACAAGTGATGCTTTGGGCAACAA GAAGAAGCAGGATCGCTCTTCATGTGGTTCCAACACACCATCAAGTAGTGATGTAGAGGC AGAACATGTTCCTGAGAACCAAGATCAAGCTAACGACAAGACACAGCAAGCATGTTGCAG TAATTCTTCAGCTGGTGACATGAACCATCGCAGGTTTAGGAACATTTCAAGCACGAATGA TTCATGGAAGGAAGTTTCCGAGGAGGGTCGTATGGCTTTCGATAAACTGTTCAGTAGAGG AAAGCTTCCCCAAAGCTTTTCTCCTCCACAAGCAGAAGGATTGAAGGTGGTTCCCAGAGG GGAGCAAGATGAAGCTACTACGGTGACGGTCGACCTCAACAAGAGTGCTGCAGTTATGGA CCATGAACTTGACACATTGGTTGGGCCAAGAGCTTCCTTTCCCATTGAATTGTCACACCT GAATATGAAATC