- Transcript HORVU7Hr1G070780.6
- Transcript IDHORVU7Hr1G070780.6
- Gene IDHORVU7Hr1G070780
Barley RTD
Exon Structure of HORVU7Hr1G070780.6
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 385320482 | 385319909 | - |
| chr7H | 2 | 385320686 | 385320596 | - |
| chr7H | 3 | 385321739 | 385320936 | - |
| chr7H | 4 | 385322055 | 385321816 | - |
| chr7H | 5 | 385322493 | 385322164 | - |
| chr7H | 6 | 385323086 | 385322800 | - |
| chr7H | 7 | 385324140 | 385323651 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06140.3 | +1 | 0.0 | 743 | 445/741 (60%) | protein|no apical meristem protein, putative, expressed |
| TAIR PP10 | AT1G33060 @ ARAPORT AT1G33060.1 @ TAIR |
+1 | 2e-66 | 235 | 117/215 (54%) | Symbols: ANAC014, NAC014 | NAC 014 | chr1:11975518-11978493 REVERSE LENGTH=648 |
| BRACH PP3 | Bradi3g16480.1.p | +1 | 0.0 | 831 | 494/808 (61%) | pacid=32813441 transcript=Bradi3g16480.1 locus=Bradi3g16480 ID=Bradi3g16480.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2816 bp)
>HORVU7Hr1G070780.6 2816 150831_barley_pseudomolecules ATCACTCGACAGTGGGCGGCGTGGTCCGGCGGCAGTGGCCGAACCGTAATACGATGGTCA TCAACAGGGTAAACTCGGACGAGGGGGTATATACAGAGCAAATTCCGGACACGGTAAAGG AAGTCACGCGGCACTCGCTTTCTTCTCCCACACGTCTCCTCCCCGCGTCCTCCCCCTAAA AATCCCCAAATCCGACCAAACCCTAGGCAAAATCCACTCCCCTCCGCTTCCTTCGCTGCT AAGTATATCCCCTGGGCTCCGAATCTCCTACCGGGTTGGGTCTTGTAGTCGTTGGATGAG AGCTTGGGACAGTGGAGGAGGATGACGGTGATGGAGCTCAAGGCGCTACCGCTCGGTTTC CGGTTCCACCCCACCGACGAGGAGCTCGTCAGGCACTACCTCAAGGGGAAGATCACGGGG CAGATCAAGAACGAGGTCGAGGTGATCCCGGAGATCGACGTCTGCAAGTGCGAGCCGTGG GACCTCCCAGATAAAGCTTTGATCCGCTCGGAGGATCCAGAGTGGTTCTTCTTTGCACCC AAGGACCGCAAATATCCCAATGGAAGCAGGTCAAACAGGGCGACGGAGGCCGGGTACTGG AAGGCTACCGGGAAGGACAGGGTCATCAAGTCCAAGGGCGAGAAGAAAAAGCAGCATATG ATTGGCATGAAGAAGACCCTTGTGTTCCACCGAGGACGTGCTCCAAAAGGGGAGCGCACT GGTTGGATTATGCACGAGTACCGCACCACCGAGCCAGAGTTTGAGTCTGGCGAGCAGGGT GGCTATGTTCTGTACCGCCTATTTCAAAAGCAAGTGGAGAAAACTGAGCGCTCCATTCCG GAGGAAATGGATAGAAGTGGCTACTCTCCCACTCCATCTCGTTCTACTCCTGACAATATG GAAGCAAACGAGGAAGCTATCACACTCATAAATAAGGAATCTCCTGAATCTGGTCTGCAT GGATGTCCAATTGAGTTGCCATGTACAATTGAAACTCTGGGCGCCCCGGTTACAAGGTGG CTTGCAGACCGAAATGGCAATCCCGGGACAGATGAAGCAAACGATGTAGGCATGCCTTTT CATCGTGGTGTCGATGAAAGTCCCAAGGCCGATCTGTCAGTTGGCTCTCTGGCTCACCTA ATTGATTCACAGACGAAAAATCTCGGTTCTCATGAGTTTGCCACCGTTTCTGCCCCCATG TTACCGGATGACCATTTGGACAATCTTCTACTTCATTTAACTCATAATTCGGTGGAAGAT TTCTTGAATGAAACAATTGCTGATCCAGACGAGCTTTCGTCAACTGCATGTAAAGTTCAG TACGATTCAGACAATGGGATTATGCAGGCTCAGGGTGATTTGCTATATGATGATCCAAAC TGGTTTGGTAATTTTCTGTCAGATGACACAAATCCACAACCAAGTGGATTATATGAGAAT GCACCATTGCTTCCTTATGGCACTAATCCTGATGTACTTTCCATGGACTCCGGCGACGAG TCCTTGCAAGATTTGTTCAATAGCATGGACGATTCAAGTTGGCAGAATGATGTATGGAGC AACGGATTTGGATTTAATCCCATGCATCAGCAGTTACAGTCTACTGTGCATCCGAACTAT ATATTTTCTCAACAGGGCATTGCACGCAGGAGGCTTCGGCTACTAGATTCATTGTCTGAT GTCAATGTTGAGAGTAGAGAGAGCATGACCAGAGATGAACATGAAGATGAAGAATCAGAT ATTGTAACTTCGAAATATAGGAGTGAATCTGTTGAATCATCTGCAGATGTAGATGAGTCT GAGTCAACCGGGGTTACTATTATGAGCCGGCGCCGTGCTCTAACTAAAAGTGTGCCTTCC GACCGCGATGATGCTGAATCAACGGGGATTACTATTATGGGCCGGCGCTCTGCTCCAAGT TCAAATGCGCCTTCCGATGAAGCTGATGCTGAGGCAACAGGGATTAATATTGTGAGCCGA CGCACTGCTCCAAGTTCAAGCACAGATAACTCATTTACCACCGAACAGGGGACTGCAGTG CGAAGGTTGCGGCTACAATCGAACCTTGACGCAGGATCATGTTCCAGTGTTGATGGTTTG TCAAGTTGCATTATAGAACATGGAAGTGAAAACGAAGGGCTGGAAGCTGAGATTGACGAG CATGTGGATACAAACTTCCTTGATGATGTTGGTTTTGCTGGCAACAGTCATGCTGATGAG CATATGTACATGCCTGATCATGAAGCTAATTCTCTTACGAGGCTGCGGAAGACAGCAGAG AAAAGCGACAAGGAGAACAAGCAGGAGTGTGGTCCCCAGTCACATGTGAGAGCACCAAGG AAGAGGGGAGGCTTCGCAGCACGCATGATCTTGCCAGTTCTGTCGGTGGCTCTTCTCGTT CTTGTTAGCGTTGGGGTCTACGGATGGGCATAATAGCTCTCTTAAAATGGGATTTAATGT GTCACATTTTCCCCACATCGGCTGTGAGCATTGTACATACTGTGTCTTACTGCCCGCGTT TAGACGGTTGTAAGACAGAGAAGTGTTTGTTCCCCTTTCGGCGGGGAAGTGTAAGTGAGG TAGCAAATGAGAAGCGGGATGAAGCAAGGAGCAAGTGTTGCTGTAGATGCCTGTGACTTG GTACATGCTAGTTTTCGTTTTTCTGTCACCGCAGGTGTTGGCAACCAGGTTGTAGTCATC CATTATGCGTGTTGTTGTGATGTTGTAAGGTCTGAACCTAATTAGATCTGTTGCAGATCC TTTTTCCCATTTTGTGGAACTTTGCAGTCGCTTCATTTTTAGTGATGCAGTTGCTT