Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G069070.9

ChromosomeExonStartStopDirection
chr7H1367195109367194748+
chr7H2367196042367195969+
chr7H3367196298367196124+
chr7H4367196746367196670+
chr7H5367197114367196832+
chr7H6367197307367197240+
chr7H7367198300367197465+
chr7H8367199108367198377+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g12760.2 +2 0.0 605 297/384 (77%) protein|YT521-B, putative, expressed
TAIR PP10 AT3G13060 @ ARAPORT
AT3G13060.2 @ TAIR		 +1 3e-55 202 94/160 (59%) Symbols: ECT5 | evolutionarily conserved C-terminal region 5 | chr3:4180625-4183632 FORWARD LENGTH=634
BRACH PP3 Bradi3g18190.1.p +2 0.0 692 335/402 (83%) pacid=32821513 transcript=Bradi3g18190.1 locus=Bradi3g18190 ID=Bradi3g18190.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2607 bp)

>HORVU7Hr1G069070.9 2607 150831_barley_pseudomolecules
TACGGACAGACTGTAACCGGATGTTAGTTCGTTGATGATGAATAAAGTCCCAATTCGATG
AAAGAAAAATCCGGACCGGGATTGTGCGCGTGGACAAAACGAGCCGGCACAGGTCCGGTT
TTTAAAGCCCGCGATGATTAGCGTGGCCGGACCTCTTCCTCTTCGTCTCGCATACTCACC
AGCGTCAAACCCGACGGTGGAAGGAAGCCCCTCCTCGCCGACCATCGACGGCCTCCGTGT
CTCCTCCAGCCGGAGAACGTAGCTACGCTAGCCCCTCTTTCCTCTCCTGTTTCGTCCCCC
TCCTCCTCGTCCCATCTGCTGGAACATGGCGTTGAGCGGAGGAGATTCGTCCGGATTCGT
CGATTGCACAATTCTGCTGCAATCAGAAATTGTAGTTGATAATAACCCCTCCAAGAGTAC
AAATACCAAAGAGCAGATTATTTCTATTACGGCTGAGAAAACAAGTGCTTCTGATGCGCG
GGGCTCTACCTCCTTAAAGTCACCAAAAGGTGCACAAGAGAAGGCTAATTTTTTGGGAAA
AGGTGGAGAACAGCCTTATGTCTACCAGCCCAATGTGTATGCTCCACAGCCACAGACAGT
CTATTCTGGAGGATATATCAACCCTTCAGGGCAATGGGAAGAGTATCCCTATTATGTGAG
TATGGAAGGAGTCCATTCTGCGTCACCTTCAATCATGCTATCTCCTGGGTATGCGAACAA
CCCCCAAATGATGTATGGAGCTTATTCTCCTGTTTCAACTGTTGGAGAGGGTCAGTCCTA
CTCCCCTATGCACTTCCCCTTCTCAAATCCGTACTACCAGCCACCGGCTTCTCTTAGTAT
GGGATATTCAAATTCTGGTACTGGAATGTCTCAAGGAGACCCTATGCTTCAGCAAGAGTA
CTTCCTTCCTGATGGTCTTCTCTATTCACCCACAGCAGTGTACCGCCAACCATTTGGGTC
ATACAACAGAGCGGCAACACAACCAAGCAATGCTTCGGGACTATTTGGGCAAGGGAATGC
ACCATTGGCTTTTGGAATGCAGCATGGAACAATGTATAATTCTGGATCCTACAAGGCACA
CCAACAAGCTAGTAAATATGGAGGCACTACTCCTAATTGGGGTTCTGCCGGTCGTAGATT
TAATAATTTTGACTGCAACTCCAGTCAACAAAGGGGGAGCATGCCATTCAATATCCAGAA
TGGTGCTCTGGAGTTTCTGAACGAGCAAAACCGCGGCCCACGTGCTGCAAAACCAAAGAA
ACAAGACAGAGACAATTCTTTAGTAGATGACAAAAGCGAGAAAACCACTCTGCTTATTGA
CAGTGAACTGTACAATCGTCCTGATTTTGCCACGGAGTACAAGGATGCGATTTTTTTTGT
AATTAAATCATACACAGAGGACCATGTACATAGGAGCATTAAGTACAATGTCTGGGCCAG
CACAGCTAGTGGGAATAGAAAGCTGGATTCAGCTTATCGTGCGGCCAAACAGAAAGAAGA
CCATTCCCGTGTTTTCTTGTTCTTCTCGGTAAGACTAGCCCCTTTCTTTTTGTAGTTTAT
GCTCCTGTTGATGTAAGTACGAGGCTGAGAATGATGCATTGGATCTACATGCTTTGTGTC
TGTAGAGATGTGAAATTTATTCTGATTCATAACTGCTTATAGGTTAATGGCAGTGGTCAG
TTCTGCGGTGTTGCTGAGATGATTGGACCTGTTGACTTCGACAGGAGCGTTGATTATTGG
CAGCAAGACAAGTGGAGTGGCCAGTTTCCTGTGAAGTGGCACATTATTAAGGATGTCCCA
AACACCCTACTCCGGCACATCACTCTTGAGAACAATGACAACAAACCTGTAACAAATAGC
AGGGACACTCAGGAGGTCAAGCTAGAGTATGGTCTCCAGATGCTAAGCATATTCAAGAAT
CATGAGGCCGAGACAACCATTGTGGAGGACTTCGACTTCTATGAGCAACGGGAGGAAGCC
TTGAAGGAAAATAGACGTCAGCAGCAGCCTGGCAGCGCAGAGTCCCTGAAGCCAACAGAT
GCTAAGGCTGTAGGAAGTTCTGTTACTCATATCGTGGATTCATTTTCTCGAAGCGTCCAG
CTGAAAGAGATCGAGAAAAGTGATAAGAGAACTGATGGTGCCATCTCAGTGAATGGTTCA
CAGACAGCTACCGTCAAGGCCGAAAAAAGCACTGCAAACAAAACTACAGGTTCTGTGGAG
GAGAGCAGTTGATTACCTCCTGCCATTTACTAGTTTGGAGCAGCAGTTGGATCCATATGA
TTTGATGCTCGTCTGGAGTTGAGAAGGGAAAAAGCTGCCGATTCGGGTTTAGATTTGGGC
TGCTGCTGCTTGCAGTTGTGAACATCATACTCCTTATTTCGCCTCCATTTAGGTTATAGT
TTTTCAATATCATAGTTTCAAAATTCTTGTTTGTGGATCCTTGCTTCTGTGTTCTTTCTT
GTTTTCTTCTCTCTTTGTTTTACTTGCGTTGTGTCGTGAATGCTGTTCAGTTTTAGTGGC
CTTCTCATCACTTTTGGTTTACCGTCTGTCATAAATGCTGCCCAGTTGTGTTGTGAATGA
TGTTCTCTTTTACTACTCCCTCCGTCT