Gene Data
Barley RTD
Links



Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u5329196.7++4413-151Containing




Transcripts from Gene HORVU7Hr1G069070

TranscriptLength(bp)Description
HORVU7Hr1G069070.12417gene=HORVU7Hr1G069070 CDS=375-2039
HORVU7Hr1G069070.22525gene=HORVU7Hr1G069070 CDS=375-2147
HORVU7Hr1G069070.32575gene=HORVU7Hr1G069070 CDS=781-2217
HORVU7Hr1G069070.42572gene=HORVU7Hr1G069070 CDS=781-2214
HORVU7Hr1G069070.52512gene=HORVU7Hr1G069070 CDS=701-2134
HORVU7Hr1G069070.62471gene=HORVU7Hr1G069070 CDS=339-2108
HORVU7Hr1G069070.72293gene=HORVU7Hr1G069070 CDS=331-1935
HORVU7Hr1G069070.82356gene=HORVU7Hr1G069070 CDS=331-1998
HORVU7Hr1G069070.92607gene=HORVU7Hr1G069070 CDS=326-1555
HORVU7Hr1G069070.101235gene=HORVU7Hr1G069070 CDS=284-1234
HORVU7Hr1G069070.112511gene=HORVU7Hr1G069070 CDS=616-2136
HORVU7Hr1G069070.121775gene=HORVU7Hr1G069070 CDS=3-1775
HORVU7Hr1G069070.131744gene=HORVU7Hr1G069070 CDS=350-1744
HORVU7Hr1G069070.141537gene=HORVU7Hr1G069070 CDS=134-1537
HORVU7Hr1G069070.151141gene=HORVU7Hr1G069070 CDS=3-1139
HORVU7Hr1G069070.161630gene=HORVU7Hr1G069070 CDS=2-1255



Exon Structure of HORVU7Hr1G069070


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g12760.2 +2 0.0 605 297/384 (77%) protein|YT521-B, putative, expressed
TAIR PP10 AT3G13060 @ ARAPORT
AT3G13060.2 @ TAIR		 +1 3e-55 202 94/160 (59%) Symbols: ECT5 | evolutionarily conserved C-terminal region 5 | chr3:4180625-4183632 FORWARD LENGTH=634
BRACH PP3 Bradi3g18190.1.p +2 0.0 692 335/402 (83%) pacid=32821513 transcript=Bradi3g18190.1 locus=Bradi3g18190 ID=Bradi3g18190.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons