- Transcript HORVU7Hr1G069070.14
- Transcript IDHORVU7Hr1G069070.14
- Gene IDHORVU7Hr1G069070
Exon Structure of HORVU7Hr1G069070.14
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 367196546 | 367196519 | + |
chr7H | 2 | 367196746 | 367196670 | + |
chr7H | 3 | 367197114 | 367196810 | + |
chr7H | 4 | 367197307 | 367197240 | + |
chr7H | 5 | 367197953 | 367197465 | + |
chr7H | 6 | 367198300 | 367198088 | + |
chr7H | 7 | 367198733 | 367198377 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g12760.1 | +2 | 0.0 | 757 | 360/474 (76%) | protein|YT521-B, putative, expressed |
TAIR PP10 | AT3G13060 @ ARAPORT AT3G13060.2 @ TAIR |
+2 | 7e-116 | 355 | 218/499 (44%) | Symbols: ECT5 | evolutionarily conserved C-terminal region 5 | chr3:4180625-4183632 FORWARD LENGTH=634 |
BRACH PP3 | Bradi3g18190.1.p | +2 | 0.0 | 803 | 388/478 (81%) | pacid=32821513 transcript=Bradi3g18190.1 locus=Bradi3g18190 ID=Bradi3g18190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1537 bp)
>HORVU7Hr1G069070.14 1537 150831_barley_pseudomolecules AGACGTCTTATATTTAGTTACAGAGGTAGATATATCAACCCTTCAGGGCAATGGGAAGAG TATCCCTATTATGTGAGTATGGAAGGAGTCCATTCTGCGTCACCTGTAATTATACAATGT TAACTAGTCAATCATGCTATCTCCTGGGTATGCGAACAACCCCCAAATGATGTATGGAGC TTATTCTCCTGTTTCAACTGTTGGAGAGGGTCAGTCCTACTCCCCTATGCACTTCCCCTT CTCAAATCCGTACTACCAGCCACCGGCTTCTCTTAGTATGGGATATTCAAATTCTGGTAC TGGAATGTCTCAAGGAGACCCTATGCTTCAGCAAGAGTACTTCCTTCCTGATGGTCTTCT CTATTCACCCACAGCAGTGTACCGCCAACCATTTGGGTCATACAACAGAGCGGCAACACA ACCAAGCAATGCTTCGGGACTATTTGGGCAAGGGAATGCACCATTGGCTTTTGGAATGCA GCATGGAACAATGTATAATTCTGGATCCTACAAGGCACACCAACAAGCTAGTAAATATGG AGGCACTACTCCTAATTGGGGTTCTGCCGGTCGTAGATTTAATAATTTTGACTGCAACTC CAGTCAACAAAGGGGGAGCATGCCATTCAATATCCAGAATGGTGCTCTGGAGTTTCTGAA CGAGCAAAACCGCGGCCCACGTGCTGCAAAACCAAAGAAACAAGACAGAGACAATTCTTT AGTAGATGACAAAAGCGAGAAAACCACTCTGCTTATTGACAGTGAACTGTACAATCGTCC TGATTTTGCCACGGAGTACAAGGATGCGATTTTTTTTGTAATTAAATCATACACAGAGGA CCATGTACATAGGAGCATTAAGTACAATGTCTGGGCCAGCACAGCTAGTGGGAATAGAAA GCTGGATTCAGCTTATCGTGCGGCCAAACAGAAAGAAGACCATTCCCGTGTTTTCTTGTT CTTCTCGGTTAATGGCAGTGGTCAGTTCTGCGGTGTTGCTGAGATGATTGGACCTGTTGA CTTCGACAGGAGCGTTGATTATTGGCAGCAAGACAAGTGGAGTGGCCAGTTTCCTGTGAA GTGGCACATTATTAAGGATGTCCCAAACACCCTACTCCGGCACATCACTCTTGAGAACAA TGACAACAAACCTGTAACAAATAGCAGGGACACTCAGGAGGTCAAGCTAGAGTATGGTCT CCAGATGCTAAGCATATTCAAGAATCATGAGGCCGAGACAACCATTGTGGAGGACTTCGA CTTCTATGAGCAACGGGAGGAAGCCTTGAAGGAAAATAGACGTCAGCAGCAGCCTGGCAG CGCAGAGTCCCTGAAGCCAACAGATGCTAAGGCTGTAGGAAGTTCTGTTACTCATATCGT GGATTCATTTTCTCGAAGCGTCCAGCTGAAAGAGATCGAGAAAAGTGATAAGAGAACTGA TGGTGCCATCTCAGTGAATGGTTCACAGACAGCTACCGTCAAGGCCGAAAAAAGCACTGC AAACAAAACTACAGGTTCTGTGGAGGAGAGCAGTTGA