- Transcript HORVU7Hr1G069070.11
- Transcript IDHORVU7Hr1G069070.11
- Gene IDHORVU7Hr1G069070
Barley RTD
Exon Structure of HORVU7Hr1G069070.11
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 367195109 | 367194867 | + |
| chr7H | 2 | 367196042 | 367195969 | + |
| chr7H | 3 | 367196298 | 367196124 | + |
| chr7H | 4 | 367196746 | 367196670 | + |
| chr7H | 5 | 367197114 | 367196832 | + |
| chr7H | 6 | 367197953 | 367197240 | + |
| chr7H | 7 | 367198300 | 367198088 | + |
| chr7H | 8 | 367199108 | 367198377 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g12760.2 | +1 | 0.0 | 555 | 260/355 (73%) | protein|YT521-B, putative, expressed |
| TAIR PP10 | AT3G13060 @ ARAPORT AT3G13060.2 @ TAIR |
+1 | 5e-98 | 318 | 153/272 (56%) | Symbols: ECT5 | evolutionarily conserved C-terminal region 5 | chr3:4180625-4183632 FORWARD LENGTH=634 |
| BRACH PP3 | Bradi3g18190.1.p | +1 | 0.0 | 606 | 288/355 (81%) | pacid=32821513 transcript=Bradi3g18190.1 locus=Bradi3g18190 ID=Bradi3g18190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2511 bp)
>HORVU7Hr1G069070.11 2511 150831_barley_pseudomolecules TTTTAAAGCCCGCGATGATTAGCGTGGCCGGACCTCTTCCTCTTCGTCTCGCATACTCAC CAGCGTCAAACCCGACGGTGGAAGGAAGCCCCTCCTCGCCGACCATCGACGGCCTCCGTG TCTCCTCCAGCCGGAGAACGTAGCTACGCTAGCCCCTCTTTCCTCTCCTGTTTCGTCCCC CTCCTCCTCGTCCCATCTGCTGGAACATGGCGTTGAGCGGAGGAGATTCGTCCGGATTCG TCGATTGCACAATTCTGCTGCAATCAGAAATTGTAGTTGATAATAACCCCTCCAAGAGTA CAAATACCAAAGAGCAGATTATTTCTATTACGGCTGAGAAAACAAGTGCTTCTGATGCGC GGGGCTCTACCTCCTTAAAGTCACCAAAAGGTGCACAAGAGAAGGCTAATTTTTTGGGAA AAGGTGGAGAACAGCCTTATGTCTACCAGCCCAATGTGTATGCTCCACAGCCACAGACAG TCTATTCTGGAGGATATATCAACCCTTCAGGGCAATGGGAAGAGTATCCCTATTATGTGA GTATGGAAGGAGTCCATTCTGCGTCACCTTCAATCATGCTATCTCCTGGGTATGCGAACA ACCCCCAAATGATGTATGGAGCTTATTCTCCTGTTTCAACTGTTGGAGAGGGTCAGTCCT ACTCCCCTATGCACTTCCCCTTCTCAAATCCGTACTACCAGCCACCGGCTTCTCTTAGTA TGGGATATTCAAATTCTGGTACTGGAATGTCTCAAGGAGACCCTATGCTTCAGCAAGAGT ACTTCCTTCCTGATGGTCTTCTCTATTCACCCACAGCAGTGTACCGCCAACCATTTGGGT CATACAACAGAGCGGCAACACAACCAAGCAATGCTTCGGGACTATTTGGGCAAGGGAATG CACCATTGGCTTTTGGAATGGTATGTTGTCATGCAATTTGGACTGTTTGCACAAGCTCCC CTGGACACGTTCAGTTCAGTAAAAATGGAGCACTTATTATTGGACCTCAAGTTTGGTTAT TTGTTAAGCTTACTGCGCCCTGAAATGTCCAGTACTGAGTATGCATGTTATTTGCAGCAG CATGGAACAATGTATAATTCTGGATCCTACAAGGCACACCAACAAGCTAGTAAATATGGA GGCACTACTCCTAATTGGGGTTCTGCCGGTCGTAGATTTAATAATTTTGACTGCAACTCC AGTCAACAAAGGGGGAGCATGCCATTCAATATCCAGAATGGTGCTCTGGAGTTTCTGAAC GAGCAAAACCGCGGCCCACGTGCTGCAAAACCAAAGAAACAAGACAGAGACAATTCTTTA GTAGATGACAAAAGCGAGAAAACCACTCTGCTTATTGACAGTGAACTGTACAATCGTCCT GATTTTGCCACGGAGTACAAGGATGCGATTTTTTTTGTAATTAAATCATACACAGAGGAC CATGTACATAGGAGCATTAAGTACAATGTCTGGGCCAGCACAGCTAGTGGGAATAGAAAG CTGGATTCAGCTTATCGTGCGGCCAAACAGAAAGAAGACCATTCCCGTGTTTTCTTGTTC TTCTCGGTTAATGGCAGTGGTCAGTTCTGCGGTGTTGCTGAGATGATTGGACCTGTTGAC TTCGACAGGAGCGTTGATTATTGGCAGCAAGACAAGTGGAGTGGCCAGTTTCCTGTGAAG TGGCACATTATTAAGGATGTCCCAAACACCCTACTCCGGCACATCACTCTTGAGAACAAT GACAACAAACCTGTAACAAATAGCAGGGACACTCAGGAGGTCAAGCTAGAGTATGGTCTC CAGATGCTAAGCATATTCAAGAATCATGAGGCCGAGACAACCATTGTGGAGGACTTCGAC TTCTATGAGCAACGGGAGGAAGCCTTGAAGGAAAATAGACGTCAGCAGCAGCCTGGCAGC GCAGAGTCCCTGAAGCCAACAGATGCTAAGGCTGTAGGAAGTTCTGTTACTCATATCGTG GATTCATTTTCTCGAAGCGTCCAGCTGAAAGAGATCGAGAAAAGTGATAAGAGAACTGAT GGTGCCATCTCAGTGAATGGTTCACAGACAGCTACCGTCAAGGCCGAAAAAAGCACTGCA AACAAAACTACAGGTTCTGTGGAGGAGAGCAGTTGATTACCTCCTGCCATTTACTAGTTT GGAGCAGCAGTTGGATCCATATGATTTGATGCTCGTCTGGAGTTGAGAAGGGAAAAAGCT GCCGATTCGGGTTTAGATTTGGGCTGCTGCTGCTTGCAGTTGTGAACATCATACTCCTTA TTTCGCCTCCATTTAGGTTATAGTTTTTCAATATCATAGTTTCAAAATTCTTGTTTGTGG ATCCTTGCTTCTGTGTTCTTTCTTGTTTTCTTCTCTCTTTGTTTTACTTGCGTTGTGTCG TGAATGCTGTTCAGTTTTAGTGGCCTTCTCATCACTTTTGGTTTACCGTCTGTCATAAAT GCTGCCCAGTTGTGTTGTGAATGATGTTCTCTTTTACTACTCCCTCCGTCT