- Transcript HORVU7Hr1G069070.1
- Transcript IDHORVU7Hr1G069070.1
- Gene IDHORVU7Hr1G069070
Barley RTD
Exon Structure of HORVU7Hr1G069070.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 367195109 | 367194699 | + |
| chr7H | 2 | 367196042 | 367195969 | + |
| chr7H | 3 | 367196298 | 367196124 | + |
| chr7H | 4 | 367196746 | 367196670 | + |
| chr7H | 5 | 367196913 | 367196832 | + |
| chr7H | 6 | 367197114 | 367197019 | + |
| chr7H | 7 | 367197307 | 367197240 | + |
| chr7H | 8 | 367197953 | 367197468 | + |
| chr7H | 9 | 367198300 | 367198088 | + |
| chr7H | 10 | 367199111 | 367198377 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g12760.2 | +3 | 0.0 | 813 | 401/572 (70%) | protein|YT521-B, putative, expressed |
| TAIR PP10 | AT3G13060 @ ARAPORT AT3G13060.2 @ TAIR |
+3 | 1e-100 | 325 | 184/397 (46%) | Symbols: ECT5 | evolutionarily conserved C-terminal region 5 | chr3:4180625-4183632 FORWARD LENGTH=634 |
| BRACH PP3 | Bradi3g18190.2.p | +3 | 0.0 | 944 | 459/590 (78%) | pacid=32821514 transcript=Bradi3g18190.2 locus=Bradi3g18190 ID=Bradi3g18190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2417 bp)
>HORVU7Hr1G069070.1 2417 150831_barley_pseudomolecules GGGACGGATAGCTGGCTTGATCAAATCCCAGATTTTCTCATTAGCAGCCTACGGACAGAC TGTAACCGGATGTTAGTTCGTTGATGATGAATAAAGTCCCAATTCGATGAAAGAAAAATC CGGACCGGGATTGTGCGCGTGGACAAAACGAGCCGGCACAGGTCCGGTTTTTAAAGCCCG CGATGATTAGCGTGGCCGGACCTCTTCCTCTTCGTCTCGCATACTCACCAGCGTCAAACC CGACGGTGGAAGGAAGCCCCTCCTCGCCGACCATCGACGGCCTCCGTGTCTCCTCCAGCC GGAGAACGTAGCTACGCTAGCCCCTCTTTCCTCTCCTGTTTCGTCCCCCTCCTCCTCGTC CCATCTGCTGGAACATGGCGTTGAGCGGAGGAGATTCGTCCGGATTCGTCGATTGCACAA TTCTGCTGCAATCAGAAATTGTAGTTGATAATAACCCCTCCAAGAGTACAAATACCAAAG AGCAGATTATTTCTATTACGGCTGAGAAAACAAGTGCTTCTGATGCGCGGGGCTCTACCT CCTTAAAGTCACCAAAAGGTGCACAAGAGAAGGCTAATTTTTTGGGAAAAGGTGGAGAAC AGCCTTATGTCTACCAGCCCAATGTGTATGCTCCACAGCCACAGACAGTCTATTCTGGAG GATATATCAACCCTTCAGGGCAATGGGAAGAGTATCCCTATTATGTGAGTATGGAAGGAG TCCATTCTGCGTCACCTTCAATCATGCTATCTCCTGGGTATGCGAACAACCCCCAAATGA TGTATGGAGCTTATTCTCCTGTTTCAACTGTTGGAGAGGGAGACCCTATGCTTCAGCAAG AGTACTTCCTTCCTGATGGTCTTCTCTATTCACCCACAGCAGTGTACCGCCAACCATTTG GGTCATACAACAGAGCGGCAACACAACCAAGCAATGCTTCGGGACTATTTGGGCAAGGGA ATGCACCATTGGCTTTTGGAATGCATGGAACAATGTATAATTCTGGATCCTACAAGGCAC ACCAACAAGCTAGTAAATATGGAGGCACTACTCCTAATTGGGGTTCTGCCGGTCGTAGAT TTAATAATTTTGACTGCAACTCCAGTCAACAAAGGGGGAGCATGCCATTCAATATCCAGA ATGGTGCTCTGGAGTTTCTGAACGAGCAAAACCGCGGCCCACGTGCTGCAAAACCAAAGA AACAAGACAGAGACAATTCTTTAGTAGATGACAAAAGCGAGAAAACCACTCTGCTTATTG ACAGTGAACTGTACAATCGTCCTGATTTTGCCACGGAGTACAAGGATGCGATTTTTTTTG TAATTAAATCATACACAGAGGACCATGTACATAGGAGCATTAAGTACAATGTCTGGGCCA GCACAGCTAGTGGGAATAGAAAGCTGGATTCAGCTTATCGTGCGGCCAAACAGAAAGAAG ACCATTCCCGTGTTTTCTTGTTCTTCTCGGTTAATGGCAGTGGTCAGTTCTGCGGTGTTG CTGAGATGATTGGACCTGTTGACTTCGACAGGAGCGTTGATTATTGGCAGCAAGACAAGT GGAGTGGCCAGTTTCCTGTGAAGTGGCACATTATTAAGGATGTCCCAAACACCCTACTCC GGCACATCACTCTTGAGAACAATGACAACAAACCTGTAACAAATAGCAGGGACACTCAGG AGGTCAAGCTAGAGTATGGTCTCCAGATGCTAAGCATATTCAAGAATCATGAGGCCGAGA CAACCATTGTGGAGGACTTCGACTTCTATGAGCAACGGGAGGAAGCCTTGAAGGAAAATA GACGTCAGCAGCAGCCTGGCAGCGCAGAGTCCCTGAAGCCAACAGATGCTAAGGCTGTAG GAAGTTCTGTTACTCATATCGTGGATTCATTTTCTCGAAGCGTCCAGCTGAAAGAGATCG AGAAAAGTGATAAGAGAACTGATGGTGCCATCTCAGTGAATGGTTCACAGACAGCTACCG TCAAGGCCGAAAAAAGCACTGCAAACAAAACTACAGGTTCTGTGGAGGAGAGCAGTTGAT TACCTCCTGCCATTTACTAGTTTGGAGCAGCAGTTGGATCCATATGATTTGATGCTCGTC TGGAGTTGAGAAGGGAAAAAGCTGCCGATTCGGGTTTAGATTTGGGCTGCTGCTGCTTGC AGTTGTGAACATCATACTCCTTATTTCGCCTCCATTTAGGTTATAGTTTTTCAATATCAT AGTTTCAAAATTCTTGTTTGTGGATCCTTGCTTCTGTGTTCTTTCTTGTTTTCTTCTCTC TTTGTTTTACTTGCGTTGTGTCGTGAATGCTGTTCAGTTTTAGTGGCCTTCTCATCACTT TTGGTTTACCGTCTGTCATAAATGCTGCCCAGTTGTGTTGTGAATGATGTTCTCTTTTAC TACTCCCTCCGTCTNNN