- Transcript HORVU7Hr1G057140.6
- Transcript IDHORVU7Hr1G057140.6
- Gene IDHORVU7Hr1G057140
Barley RTD
Exon Structure of HORVU7Hr1G057140.6
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244648196 | 244647984 | + |
| chr7H | 2 | 244649011 | 244648793 | + |
| chr7H | 3 | 244649246 | 244649157 | + |
| chr7H | 4 | 244649454 | 244649354 | + |
| chr7H | 5 | 244649654 | 244649541 | + |
| chr7H | 6 | 244649826 | 244649745 | + |
| chr7H | 7 | 244649975 | 244649907 | + |
| chr7H | 8 | 244650345 | 244650076 | + |
| chr7H | 9 | 244651074 | 244650741 | + |
| chr7H | 10 | 244651289 | 244651173 | + |
| chr7H | 11 | 244652881 | 244651667 | + |
| chr7H | 12 | 244653452 | 244653145 | + |
| chr7H | 13 | 244653722 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.2 | +2 | 0.0 | 972 | 504/756 (67%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT3G51150 @ ARAPORT AT3G51150.2 @ TAIR |
+3 | 2e-155 | 273 | 127/180 (71%) | Symbols: | ATP binding microtubule motor family protein | chr3:19002006-19006509 FORWARD LENGTH=1054 |
| BRACH PP3 | Bradi3g42190.2.p | +2 | 0.0 | 1089 | 555/758 (73%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3266 bp)
>HORVU7Hr1G057140.6 3266 150831_barley_pseudomolecules CTTTTCCCTTCATTTTTTTTTCTACCAAAACCACTATAGTCCTCTCCCTTTCCCTTTCCC TTTCCCTTCCCCTCCTCCTCCTCCTATTCTTCTTCTCGGCACCAACAAGGAGGAGCAGAA GAGGAGAGGGGGCGACACAGTCTTGCCACTAGCTGCATTTCTCTCCTCTCGCATTGGTCG TCTTCTAGTTCCACCGTCCACCAGGGTGCGCAGGGCTGAGAAGGGCGATGGGGGCGGGGG AGGAGGATGCGGCGGCGGCATGGGAGAAGGTGGAGGCCAAGGAGGAGAGGATCATGGTGT CCGTGCGGGTGCGGCCCCTGAACGGCAGGGAGTCCGGCGACAGCTCCGACTGGGAGTGCA TTAGCCCCACCACCGTCATGTTCCGGAGTACCGTTCCTGACCGCGCCATGTTCCCCACCG CCTACACCTATGACAGGGTGTTTGGCCCCAATTGCTCTACCAGACAGGTCTACGAGGAAG GAGCAAAAGAAGTTGCTCTATCAGTTGTCAGTGGAATCAACTCAAGCATATTTGCGTATG GGCAAACAAGCAGCGGAAAGACTTACACAATGACTGGAATTACTGAGTACAGTGTGATGG ACATTTATGACTACATAGAGAAGCACCCTGAAAGAGAATTCATGCTGAAATTCTCAGCAA TAGAGATATATAATGAAGCTGTGAGGGATCTTCTGAGCCATGATACGACACCTCTTAGAC TGCTTGACGATCCTGAGAAAGGGACTACTGTTGAAAAGCTTACCGAGGAAACATTGAGGG ACAAGGACCATCTTAGGGATCTTCTTGGAATGTGTGAAGGCTCAAAGAGAGATTGGAGAA ACGGCTTTGAACGAAGCGAGTTCTAGGTCCCACCAAATACTCAGGCTGACAATCGAAAGT TCTGTTAAGCAGTATTTAGGAAGAAGCAAATCGAGCACCCTGGTGTCTTGTGTGGTACGG AATGTCTTTCTATATTCATGATTATTTGGTACTAGCATGTTTCCATCATCTCCGAGGTTC TTCTTCTGGACAGAACTTTGTTGACCTAGCTGGAAGTGAGCGAGCATCTCAGACTGCTTC AGCTGGTATGAGGTTAAAAGAAGGTAGTCATATTAATCGAAGTCTGCTAACACTGGGAAA GGTTGTTCGCCAACTCAGCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAGCT GACACGCATATTACAGTCCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACAAT GAGCCCTGCACACACTCATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGCGC AAAGGAGGTAGTTACAAATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTGAA GCATCTACAGAGAGAGCTCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCCTC CTGCACTAGTCATGCTGAAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGCTGGAAAA ACAGCTTAGGGAATTGATAGAAGAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTACT GAGAAGTGATGGTGACGACCATGACAATGATCGTGCTGCAAAGCGATGGGATGTCCATAG TCGGTCCTCAGAGTCTCTTGCACGAAATGCATCGGAGGAAGCACTTTCGGTTTCAGACAC TTATGGAGGTTCTTATCAAGATCAAGGTCACGCAGTGTTTGATGGATCATATGTCTTCAG TGCTGATCATGATGGCTTGTCATCCCCCAATAAACCAATGGATCTTCCTCAGCAAACAAG GGTTCGGCAGCCAGTTTCACCTTGGCACCCTACTAGCAACTATAGCTCTGATGGTGCGGA GTCATATAACATAAAGGAGGTAGCTTTCAGAACTGCATCTGAGGTATCCGAAGAACATTG TAGGGAAGTGCAATGTATAGAGATACATGAGCATAGAAGAAGCACAAGCCAGGAATTTAA CGTATTACTCCATGAGGGCACTAAGCTCCACATACCTGAAGTAGAGGACATCTCTAGAGA CGCAGTCCCGCAACCTGATGAAGTGCTAGAAGCAGGGAGCATAACAGAAAAAATGGAAGA TCATATGAAGATATACGCTAGCAAAGAGGAGCAGCAGGCCGAGATCATAGCAAATGCAGT AGAAGATCCTATTGAAGTGCATCAATGTGAATCTGATGACTTTGCACACAACTTTGTCAA ACTGTACCCATGTGATTCTAACATTTCTCTGGACGTTGGCAAACCTTACCCTCATGAATG TCTTACTGTAAAGAGGTGTATAACGAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAAAG CTGCAGGGCTAGCTTCATGATCATTCCAAATAGTTGGTTTGATGATTCGGAAAACACCAG GCAGACACCACCTGATGAAATCTTCAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGGAG AAGTCTGTACCAAGGAAATGATGATTGCCAAAACAATAACACTTCAGTAGACCTCTCTGC TGATTCTGGAGAAGTAGTTTGTGATGAAGTAGTTAAGGACACAGGTACCAGTGATGCAGT CAAGGACATGAGCACCAGTGCTGAAGTAGTCAAGGACATGAGTACCAATGATGAAGTAGT TAAGGCCATGAGCACCAGTGATGAAGTAGTCAAGGACATGAGCACCAGTGATGAAGTAGG CAAGGAGTCGAGTACCAGTGAAGCAGAACAAGAAGTTTGTATGGGTGACATCAGTTGTGT CACAGAGCTGGAACAGAAGACAGCAAAACACCATGAGGACCAACCCGAGGAACATGAGGC AGAGCAGACTGTTAGAGATGAGTGTACAGCAGTTAAAACTGTCAAAGATGTTGGCATAGA CGCAGTCCCGAGTACCGCCGAGTCTCCTTCGTGCTGGCCTATTGATTTTGCAAATAGGCA GCGGGAGATCATCGAGTTGTGGCACGACTGCAACGTGTCCCTAGTACACAGGACCTACTT CTTCCTCCTCTTCAAGGGAGATGCTGCAGATAGCGTCTACATGGAAGTGGAGCACAGGAG ACTGTCCTTCATCCTCAGCTCGTTCAGCACCAACTCCGCAGGAGGCGAGCTTAACTCCGC AATCGCGTCCAGCTTGAAGAATCTGAAACGTGAGAGGGACATGTTCTACAAGCAGATGCT CAAGAAGCTCGCCAACGGGGACAAGGAGGGCATCTACACCAGATGGGGGATCGATCTGGG CTCCAAACAGCGGCGGCTTCAGCTAT