Gene Data
Barley RTD
Links



Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u5259894.9++6324-343Containing




Transcripts from Gene HORVU7Hr1G057140

TranscriptLength(bp)Description
HORVU7Hr1G057140.13840gene=HORVU7Hr1G057140 CDS=1043-3526
HORVU7Hr1G057140.23718gene=HORVU7Hr1G057140 CDS=848-3718
HORVU7Hr1G057140.33715gene=HORVU7Hr1G057140 CDS=848-3715
HORVU7Hr1G057140.43764gene=HORVU7Hr1G057140 CDS=312-3449
HORVU7Hr1G057140.53680gene=HORVU7Hr1G057140 CDS=231-3365
HORVU7Hr1G057140.63266gene=HORVU7Hr1G057140 CDS=962-3265
HORVU7Hr1G057140.73631gene=HORVU7Hr1G057140 CDS=962-3445
HORVU7Hr1G057140.83830gene=HORVU7Hr1G057140 CDS=1048-3531
HORVU7Hr1G057140.93536gene=HORVU7Hr1G057140 CDS=217-3354
HORVU7Hr1G057140.103741gene=HORVU7Hr1G057140 CDS=948-3428
HORVU7Hr1G057140.113140gene=HORVU7Hr1G057140 CDS=924-3140
HORVU7Hr1G057140.123672gene=HORVU7Hr1G057140 CDS=784-3381
HORVU7Hr1G057140.133619gene=HORVU7Hr1G057140 CDS=163-3294
HORVU7Hr1G057140.143626gene=HORVU7Hr1G057140 CDS=942-3299
HORVU7Hr1G057140.153765gene=HORVU7Hr1G057140 CDS=970-3453
HORVU7Hr1G057140.163762gene=HORVU7Hr1G057140 CDS=970-3450
HORVU7Hr1G057140.173583gene=HORVU7Hr1G057140 CDS=698-3292
HORVU7Hr1G057140.183346gene=HORVU7Hr1G057140 CDS=1127-3346
HORVU7Hr1G057140.193743gene=HORVU7Hr1G057140 CDS=1071-3428
HORVU7Hr1G057140.203056gene=HORVU7Hr1G057140 CDS=3-3056
HORVU7Hr1G057140.213024gene=HORVU7Hr1G057140 CDS=320-2251
HORVU7Hr1G057140.223087gene=HORVU7Hr1G057140 CDS=1-2517
HORVU7Hr1G057140.232666gene=HORVU7Hr1G057140 CDS=2-1408
HORVU7Hr1G057140.242412gene=HORVU7Hr1G057140 CDS=1-1404
HORVU7Hr1G057140.252644gene=HORVU7Hr1G057140 CDS=1220-2644
HORVU7Hr1G057140.26538gene=HORVU7Hr1G057140 CDS=3-299
HORVU7Hr1G057140.272673gene=HORVU7Hr1G057140 CDS=570-2672
HORVU7Hr1G057140.283265gene=HORVU7Hr1G057140 CDS=489-3083
HORVU7Hr1G057140.293154gene=HORVU7Hr1G057140 CDS=106-2829
HORVU7Hr1G057140.302946gene=HORVU7Hr1G057140 CDS=3-2633
HORVU7Hr1G057140.312799gene=HORVU7Hr1G057140 CDS=1-2472
HORVU7Hr1G057140.32195gene=HORVU7Hr1G057140 CDS=1-195
HORVU7Hr1G057140.332602gene=HORVU7Hr1G057140 CDS=540-2414
HORVU7Hr1G057140.342633gene=HORVU7Hr1G057140 CDS=223-2406
HORVU7Hr1G057140.352873gene=HORVU7Hr1G057140 CDS=463-2646
HORVU7Hr1G057140.363550gene=HORVU7Hr1G057140 CDS=1175-2263
HORVU7Hr1G057140.372377gene=HORVU7Hr1G057140 CDS=414-2078
HORVU7Hr1G057140.382405gene=HORVU7Hr1G057140 CDS=411-2078



Exon Structure of HORVU7Hr1G057140


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g43400.4 +2 0.0 1067 550/812 (68%) protein|kinesin motor domain containing protein, expressed
TAIR PP10 AT5G66310 @ ARAPORT
AT5G66310.1 @ TAIR		 +2 0.0 395 305/867 (35%) Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063
BRACH PP3 Bradi3g42190.1.p +2 0.0 1162 590/795 (74%) pacid=32814334 transcript=Bradi3g42190.1 locus=Bradi3g42190 ID=Bradi3g42190.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons