- Transcript HORVU7Hr1G057140.38
- Transcript IDHORVU7Hr1G057140.38
- Gene IDHORVU7Hr1G057140
Barley RTD
Exon Structure of HORVU7Hr1G057140.38
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244652881 | 244651425 | + |
| chr7H | 2 | 244653452 | 244653142 | + |
| chr7H | 3 | 244654225 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.4 | +3 | 0.0 | 716 | 378/609 (62%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT3G51150 @ ARAPORT AT3G51150.1 @ TAIR |
+3 | 4e-49 | 187 | 91/192 (47%) | Symbols: | ATP binding microtubule motor family protein | chr3:19002006-19006509 FORWARD LENGTH=1052 |
| BRACH PP3 | Bradi3g42190.1.p | +3 | 0.0 | 825 | 418/603 (69%) | pacid=32814334 transcript=Bradi3g42190.1 locus=Bradi3g42190 ID=Bradi3g42190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2405 bp)
>HORVU7Hr1G057140.38 2405 150831_barley_pseudomolecules TGATCTCATTTATTGACATGCATGACACATAGTAGCATAGCATTTAACATGATACGATAT CTACCTATGTTACTCTAACCTTCTCTCTCTTCTTTAATTGTCTGTCACATCAGCATGTTT GCTAGTCCCAAGTACATGATACTACCTAAGTTACTCTCATTATGACCAGCCTCATACACA CGGACTTAATTTTTTACATTATTATAATGTGTGACATTTAATGATCTGTTGTCCTTTGAT AGGATGTCCATAGTCGGTCCTCAGAGTCTCTTGCACGAAATGCATCGGAGGAAGCACTTT CGGTTTCAGACACTTATGGAGGTTCTTATCAAGATCAAGGTCACGCAGTGTTTGATGGAT CATATGTCTTCAGTGCTGATCATGATGGCTTGTCATCCCCCAATAAACCAATGGATCTTC CTCAGCAAACAAGGGTTCGGCAGCCAGTTTCACCTTGGCACCCTACTAGCAACTATAGCT CTGATGGTGCGGAGTCATATAACATAAAGGAGGTAGCTTTCAGAACTGCATCTGAGGTAT CCGAAGAACATTGTAGGGAAGTGCAATGTATAGAGATACATGAGCATAGAAGAAGCACAA GCCAGGAATTTAACGTATTACTCCATGAGGGCACTAAGCTCCACATACCTGAAGTAGAGG ACATCTCTAGAGACGCAGTCCCGCAACCTGATGAAGTGCTAGAAGCAGGGAGCATAACAG AAAAAATGGAAGATCATATGAAGATATACGCTAGCAAAGAGGAGCAGCAGGCCGAGATCA TAGCAAATGCAGTAGAAGATCCTATTGAAGTGCATCAATGTGAATCTGATGACTTTGCAC ACAACTTTGTCAAACTGTACCCATGTGATTCTAACATTTCTCTGGACGTTGGCAAACCTT ACCCTCATGAATGTCTTACTGTAAAGAGGTGTATAACGAGCTCCAAGGATAGTGCATTGG CTAGAAGTCAAAGCTGCAGGGCTAGCTTCATGATCATTCCAAATAGTTGGTTTGATGATT CGGAAAACACCAGGCAGACACCACCTGATGAAATCTTCAGGTATCCTCCCAGAAGGCCTG ATAAAGTCAGGAGAAGTCTGTACCAAGGAAATGATGATTGCCAAAACAATAACACTTCAG TAGACCTCTCTGCTGATTCTGGAGAAGTAGTTTGTGATGAAGTAGTTAAGGACACAGGTA CCAGTGATGCAGTCAAGGACATGAGCACCAGTGCTGAAGTAGTCAAGGACATGAGTACCA ATGATGAAGTAGTTAAGGCCATGAGCACCAGTGATGAAGTAGTCAAGGACATGAGCACCA GTGATGAAGTAGGCAAGGAGTCGAGTACCAGTGAAGCAGAACAAGAAGTTTGTATGGGTG ACATCAGTTGTGTCACAGAGCTGGAACAGAAGACAGCAAAACACCATGAGGACCAACCCG AGGAACATGAGGCAGAGCAGCAGACTGTTAGAGATGAGTGTACAGCAGTTAAAACTGTCA AAGATGTTGGCATAGACGCAGTCCCGAGTACCGCCGAGTCTCCTTCGTGCTGGCCTATTG ATTTTGCAAATAGGCAGCGGGAGATCATCGAGTTGTGGCACGACTGCAACGTGTCCCTAG TACACAGGACCTACTTCTTCCTCCTCTTCAAGGGAGATGCTGCAGATAGCGTCTACATGG AAGTGGAGCACAGGAGACTGTCCTTCATCCTCAGCTCGTTCAGCACCAACTCCGCAGGAG GCGAGCTTAACTCCGCAATCGCGTCCAGCTTGAAGAATCTGAAACGTGAGAGGGACATGT TCTACAAGCAGATGCTCAAGAAGCTCGCCAACGGGGACAAGGAGGGCATCTACACCAGAT GGGGGATCGATCTGGGCTCCAAACAGCGGCGGCTTCAGCTATCTCGCCTCGTATGGACGC GGGCTGACATGGAGCATGTCCGGGAGAGCGCCTCGCTGGTGGCGAGGCTGATCGACCTGG TTGAGCCAGGGCAGGCTCTCAAGGAGATGTTCAGCCTCAACTTCACACTGGCTCCCAGAA CCGAACGGCGGTCTTTCAGCCTGCTACTAGGCGCGTGATCTTTGACGTACGAAGGTAGAA GGGTTTGATTTACCTAGTAAGTACAAGGAGGTTGACTTAACAGGAGAAGAGGACTATGCT GCGTATCATCGATTGGTTTCACGCATGTGTCTCTGCCTTGTTTTTGCTCGTTGTGTGCGT TTGAAAGAATTGTGTGCGCGTGCGTGTGTGATATTTCTGTGTGCAGTCTCACAAAAGTGA ATCAATCAGACAGTACAGCTCTCCCTACCTTGCGTCGTATGTTCGTTTGTAAGAGTTTGT TCGTCAACCAAAATTTTGGAAGCCATGCGTGGGAGCATCGCACCATCCGGAATTTCCTAT TTGCC