- Transcript HORVU7Hr1G057140.37
- Transcript IDHORVU7Hr1G057140.37
- Gene IDHORVU7Hr1G057140
Barley RTD
Exon Structure of HORVU7Hr1G057140.37
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244652881 | 244651422 | + |
| chr7H | 2 | 244653452 | 244653145 | + |
| chr7H | 3 | 244654197 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.4 | +3 | 0.0 | 719 | 377/608 (62%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT3G51150 @ ARAPORT AT3G51150.2 @ TAIR |
+3 | 4e-49 | 187 | 91/192 (47%) | Symbols: | ATP binding microtubule motor family protein | chr3:19002006-19006509 FORWARD LENGTH=1054 |
| BRACH PP3 | Bradi3g42190.2.p | +3 | 0.0 | 821 | 418/602 (69%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2377 bp)
>HORVU7Hr1G057140.37 2377 150831_barley_pseudomolecules AGATGATCTCATTTATTGACATGCATGACACATAGTAGCATAGCATTTAACATGATACGA TATCTACCTATGTTACTCTAACCTTCTCTCTCTTCTTTAATTGTCTGTCACATCAGCATG TTTGCTAGTCCCAAGTACATGATACTACCTAAGTTACTCTCATTATGACCAGCCTCATAC ACACGGACTTAATTTTTTACATTATTATAATGTGTGACATTTAATGATCTGTTGTCCTTT GATAGGATGTCCATAGTCGGTCCTCAGAGTCTCTTGCACGAAATGCATCGGAGGAAGCAC TTTCGGTTTCAGACACTTATGGAGGTTCTTATCAAGATCAAGGTCACGCAGTGTTTGATG GATCATATGTCTTCAGTGCTGATCATGATGGCTTGTCATCCCCCAATAAACCAATGGATC TTCCTCAGCAAACAAGGGTTCGGCAGCCAGTTTCACCTTGGCACCCTACTAGCAACTATA GCTCTGATGGTGCGGAGTCATATAACATAAAGGAGGTAGCTTTCAGAACTGCATCTGAGG TATCCGAAGAACATTGTAGGGAAGTGCAATGTATAGAGATACATGAGCATAGAAGAAGCA CAAGCCAGGAATTTAACGTATTACTCCATGAGGGCACTAAGCTCCACATACCTGAAGTAG AGGACATCTCTAGAGACGCAGTCCCGCAACCTGATGAAGTGCTAGAAGCAGGGAGCATAA CAGAAAAAATGGAAGATCATATGAAGATATACGCTAGCAAAGAGGAGCAGCAGGCCGAGA TCATAGCAAATGCAGTAGAAGATCCTATTGAAGTGCATCAATGTGAATCTGATGACTTTG CACACAACTTTGTCAAACTGTACCCATGTGATTCTAACATTTCTCTGGACGTTGGCAAAC CTTACCCTCATGAATGTCTTACTGTAAAGAGGTGTATAACGAGCTCCAAGGATAGTGCAT TGGCTAGAAGTCAAAGCTGCAGGGCTAGCTTCATGATCATTCCAAATAGTTGGTTTGATG ATTCGGAAAACACCAGGCAGACACCACCTGATGAAATCTTCAGGTATCCTCCCAGAAGGC CTGATAAAGTCAGGAGAAGTCTGTACCAAGGAAATGATGATTGCCAAAACAATAACACTT CAGTAGACCTCTCTGCTGATTCTGGAGAAGTAGTTTGTGATGAAGTAGTTAAGGACACAG GTACCAGTGATGCAGTCAAGGACATGAGCACCAGTGCTGAAGTAGTCAAGGACATGAGTA CCAATGATGAAGTAGTTAAGGCCATGAGCACCAGTGATGAAGTAGTCAAGGACATGAGCA CCAGTGATGAAGTAGGCAAGGAGTCGAGTACCAGTGAAGCAGAACAAGAAGTTTGTATGG GTGACATCAGTTGTGTCACAGAGCTGGAACAGAAGACAGCAAAACACCATGAGGACCAAC CCGAGGAACATGAGGCAGAGCAGACTGTTAGAGATGAGTGTACAGCAGTTAAAACTGTCA AAGATGTTGGCATAGACGCAGTCCCGAGTACCGCCGAGTCTCCTTCGTGCTGGCCTATTG ATTTTGCAAATAGGCAGCGGGAGATCATCGAGTTGTGGCACGACTGCAACGTGTCCCTAG TACACAGGACCTACTTCTTCCTCCTCTTCAAGGGAGATGCTGCAGATAGCGTCTACATGG AAGTGGAGCACAGGAGACTGTCCTTCATCCTCAGCTCGTTCAGCACCAACTCCGCAGGAG GCGAGCTTAACTCCGCAATCGCGTCCAGCTTGAAGAATCTGAAACGTGAGAGGGACATGT TCTACAAGCAGATGCTCAAGAAGCTCGCCAACGGGGACAAGGAGGGCATCTACACCAGAT GGGGGATCGATCTGGGCTCCAAACAGCGGCGGCTTCAGCTATCTCGCCTCGTATGGACGC GGGCTGACATGGAGCATGTCCGGGAGAGCGCCTCGCTGGTGGCGAGGCTGATCGACCTGG TTGAGCCAGGGCAGGCTCTCAAGGAGATGTTCAGCCTCAACTTCACACTGGCTCCCAGAA CCGAACGGCGGTCTTTCAGCCTGCTACTAGGCGCGTGATCTTTGACGTACGAAGGTAGAA GGGTTTGATTTACCTAGTAAGTACAAGGAGGTTGACTTAACAGGAGAAGAGGACTATGCT GCGTATCATCGATTGGTTTCACGCATGTGTCTCTGCCTTGTTTTTGCTCGTTGTGTGCGT TTGAAAGAATTGTGTGCGCGTGCGTGTGTGATATTTCTGTGTGCAGTCTCACAAAAGTGA ATCAATCAGACAGTACAGCTCTCCCTACCTTGCGTCGTATGTTCGTTTGTAAGAGTTTGT TCGTCAACCAAAATTTTGGAAGCCATGCGTGGGAGCA