- Transcript HORVU7Hr1G057140.36
- Transcript IDHORVU7Hr1G057140.36
- Gene IDHORVU7Hr1G057140
Barley RTD
Exon Structure of HORVU7Hr1G057140.36
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244654210 | 244650661 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.4 | +2 | 2e-119 | 392 | 227/404 (56%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT3G51150 @ ARAPORT AT3G51150.2 @ TAIR |
+1 | 1e-44 | 176 | 87/137 (64%) | Symbols: | ATP binding microtubule motor family protein | chr3:19002006-19006509 FORWARD LENGTH=1054 |
| BRACH PP3 | Bradi3g42190.1.p | +2 | 4e-172 | 538 | 276/405 (68%) | pacid=32814334 transcript=Bradi3g42190.1 locus=Bradi3g42190 ID=Bradi3g42190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3550 bp)
>HORVU7Hr1G057140.36 3550 150831_barley_pseudomolecules AAAGAAGACAAAGGGTAATATATTAACATGAAAATGATATCAATCACACCTTAGTCTGAA CTACTATGTTCCTCTTGCAGCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAG CTGACACGCATATTACAGTCCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACA ATGAGCCCTGCACACACTCATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGC GCAAAGGAGGTAGTTACAAATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTG AAGCATCTACAGAGAGAGCTCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCC TCCTGCACTAGTCATGCTGAAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGGTACTT TTCCTCAATTGAAATTTTCCAACCCTTGTAACAGTGTTAATTGCAGGACTGCACAATTTC ATCCACCATGTACCTGTCTATTCTTTTTTCAGCTGGAAAAACAGCTTAGGGAATTGATAG AAGAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTACTGAGAAGTGATGGTGACGACC ATGACAATGATCGTGCTGCAAAGCGATGGGTACTATCTCTCTCAGGCTACTCATAGTGGG GGTATCATAGAGTACTATCATGCATATAGTATCATGCAAAAGTGATAGTACTATTGTATG ATACTACCTCCATAATGCATAGTATCATAAACTAGTATCATAGATGATCTCATTTATTGA CATGCATGACACATAGTAGCATAGCATTTAACATGATACGATATCTACCTATGTTACTCT AACCTTCTCTCTCTTCTTTAATTGTCTGTCACATCAGCATGTTTGCTAGTCCCAAGTACA TGATACTACCTAAGTTACTCTCATTATGACCAGCCTCATACACACGGACTTAATTTTTTA CATTATTATAATGTGTGACATTTAATGATCTGTTGTCCTTTGATAGGATGTCCATAGTCG GTCCTCAGAGTCTCTTGCACGAAATGCATCGGAGGAAGCACTTTCGGTTTCAGACACTTA TGGAGGTTCTTATCAAGATCAAGGTCACGCAGTGTTTGATGGATCATATGTCTTCAGTGC TGATCATGATGGCTTGTCATCCCCCAATAAACCAATGGATCTTCCTCAGCAAACAAGGGT TCGGCAGCCAGTTTCACCTTGGCACCCTACTAGCAACTATAGCTCTGATGGTGCGGAGTC ATATAACATAAAGGAGGTAGCTTTCAGAACTGCATCTGAGGTATCCGAAGAACATTGTAG GGAAGTGCAATGTATAGAGATACATGAGCATAGAAGAAGCACAAGCCAGGAATTTAACGT ATTACTCCATGAGGGCACTAAGCTCCACATACCTGAAGTAGAGGACATCTCTAGAGACGC AGTCCCGCAACCTGATGAAGTGCTAGAAGCAGGGAGCATAACAGAAAAAATGGAAGATCA TATGAAGATATACGCTAGCAAAGAGGAGCAGCAGGCCGAGATCATAGCAAATGCAGTAGA AGATCCTATTGAAGTGCATCAATGTGAATCTGATGACTTTGCACACAACTTTGTCAAACT GTACCCATGTGATTCTAACATTTCTCTGGACGTTGGCAAACCTTACCCTCATGAATGTCT TACTGTAAAGAGGTGTATAACGAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAAAGCTG CAGGGCTAGCTTCATGATCATTCCAAATAGTTGGTTTGATGATTCGGAAAACACCAGGCA GACACCACCTGATGAAATCTTCAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGGAGAAG TCTGTACCAAGGAAATGATGATTGCCAAAACAATAACACTTCAGTAGACCTCTCTGCTGA TTCTGGAGAAGTAGTTTGTGATGAAGTAGTTAAGGACACAGGTACCAGTGATGCAGTCAA GGACATGAGCACCAGTGCTGAAGTAGTCAAGGACATGAGTACCAATGATGAAGTAGTTAA GGCCATGAGCACCAGTGATGAAGTAGTCAAGGACATGAGCACCAGTGATGAAGTAGGCAA GGAGTCGAGTACCAGTGAAGCAGAACAAGAAGTTTGTATGGGTGACATCAGTTGTGTCAC AGAGCTGGAACAGAAGACAGCAAAACACCATGAGGACCAACCCGAGGAACATGAGGCAGA GGTAATGATGTTAGTAACACACCATAGGCTTTTACTGCGCTAATAATGGGAAACTTAAAC AAAACATAATTGACTAGTACTTCCTCTGTTCCATAATATAAGAGCATTTTTCACACAGTG TGAAAAACGCTCTTATATTAAAAGACGGAGGGAGTAGTATACTGGTGCCGAAGATTACAG CTGTCAGCGCCTAATTCACCAGTCTATATTTAGCTCATATATTGAGTCGAAATAAATCAA TGTCTTTGTGTGTCATTTCAGCAGCAGACTGTTAGAGATGAGTGTACAGCAGTTAAAACT GTCAAAGATGTTGGCATAGACGCAGTCCCGAGTACCGCCGAGTCTCCTTCGTGCTGGCCT ATTGATTTTGCAAATAGGCAGCGGGAGATCATCGAGTTGTGGCACGACTGCAACGTGTCC CTAGTACACAGGACCTACTTCTTCCTCCTCTTCAAGGGAGATGCTGCAGATAGCGTCTAC ATGGAAGTGGAGCACAGGAGACTGTCCTTCATCCTCAGCTCGTTCAGCACCAACTCCGCA GGAGGCGAGCTTAACTCCGCAATCGCGTCCAGGTGAGTAAATATGTCATGTTTTAGGGTA TCCAGATCAACAGTATGTTCTTCTTTTTTGCAGGGTAACAGTATGTCCATGAATTAAAAT CTAAGTATGTTTTGATGGAATAATACTGACGCTGGTTTTTGCCCTCAGCTTGAAGAATCT GAAACGTGAGAGGGACATGTTCTACAAGCAGATGCTCAAGAAGCTCGCCAACGGGGACAA GGAGGGCATCTACACCAGATGGGGGATCGATCTGGGCTCCAAACAGCGGCGGCTTCAGCT ATCTCGCCTCGTATGGACGCGGGCTGACATGGAGCATGTCCGGGAGAGCGCCTCGCTGGT GGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGGCTCTCAAGGAGATGTTCAGCCTCAA CTTCACACTGGCTCCCAGAACCGAACGGCGGTCTTTCAGCCTGCTACTAGGCGCGTGATC TTTGACGTACGAAGGTAGAAGGGTTTGATTTACCTAGTAAGTACAAGGAGGTTGACTTAA CAGGAGAAGAGGACTATGCTGCGTATCATCGATTGGTTTCACGCATGTGTCTCTGCCTTG TTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGTGCGCGTGCGTGTGTGATATTTCTGT GTGCAGTCTCACAAAAGTGAATCAATCAGACAGTACAGCTCTCCCTACCTTGCGTCGTAT GTTCGTTTGTAAGAGTTTGTTCGTCAACCAAAATTTTGGAAGCCATGCGTGGGAGCATCG CACCATCCGG