- Transcript HORVU7Hr1G057140.35
- Transcript IDHORVU7Hr1G057140.35
- Gene IDHORVU7Hr1G057140
Barley RTD
Exon Structure of HORVU7Hr1G057140.35
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244651074 | 244650379 | + |
| chr7H | 2 | 244651289 | 244651173 | + |
| chr7H | 3 | 244652881 | 244651667 | + |
| chr7H | 4 | 244653452 | 244653145 | + |
| chr7H | 5 | 244654125 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.4 | +1 | 0.0 | 988 | 508/782 (65%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT5G66310 @ ARAPORT AT5G66310.1 @ TAIR |
+1 | 1e-96 | 328 | 276/848 (33%) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063 |
| BRACH PP3 | Bradi3g42190.2.p | +1 | 0.0 | 1093 | 557/781 (71%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2873 bp)
>HORVU7Hr1G057140.35 2873 150831_barley_pseudomolecules TGTAATCCCAGTGGTTTAGTTCTTATGTAAATAGAGTCCGGTCATAAAAATTATCAGAGT TTGCACATATATTTCCTCTTTCTTTTGTATTCACTAGATAAAGTTATTTTGAATTCCATT TTCTGTTACAGTTTGACGTTTCTCCTTTCTGCTCATTTTGTCTGCTCTTTGAAAAAATGA CCATTACAGCTGTTTGCACATATATTTCCTCTTTGTTTTGTATTCACTGTATACCTTTTC TCGACAAAGGGTAGTAAATAATTTTTCCGACAAAGGGTAAAAAAAGAAGACAAAGGGTAA TATATTAACATGAAAATGATATCAATCACACCTTAGTCTGAACTACTATGTTCCTCTTGC AGCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAGCTGACACGCATATTACAG TCCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACAATGAGCCCTGCACACACT CATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGCGCAAAGGAGGTAGTTACA AATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTGAAGCATCTACAGAGAGAG CTCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCCTCCTGCACTAGTCATGCT GAAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGCTGGAAAAACAGCTTAGGGAATTG ATAGAAGAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTACTGAGAAGTGATGGTGAC GACCATGACAATGATCGTGCTGCAAAGCGATGGGATGTCCATAGTCGGTCCTCAGAGTCT CTTGCACGAAATGCATCGGAGGAAGCACTTTCGGTTTCAGACACTTATGGAGGTTCTTAT CAAGATCAAGGTCACGCAGTGTTTGATGGATCATATGTCTTCAGTGCTGATCATGATGGC TTGTCATCCCCCAATAAACCAATGGATCTTCCTCAGCAAACAAGGGTTCGGCAGCCAGTT TCACCTTGGCACCCTACTAGCAACTATAGCTCTGATGGTGCGGAGTCATATAACATAAAG GAGGTAGCTTTCAGAACTGCATCTGAGGTATCCGAAGAACATTGTAGGGAAGTGCAATGT ATAGAGATACATGAGCATAGAAGAAGCACAAGCCAGGAATTTAACGTATTACTCCATGAG GGCACTAAGCTCCACATACCTGAAGTAGAGGACATCTCTAGAGACGCAGTCCCGCAACCT GATGAAGTGCTAGAAGCAGGGAGCATAACAGAAAAAATGGAAGATCATATGAAGATATAC GCTAGCAAAGAGGAGCAGCAGGCCGAGATCATAGCAAATGCAGTAGAAGATCCTATTGAA GTGCATCAATGTGAATCTGATGACTTTGCACACAACTTTGTCAAACTGTACCCATGTGAT TCTAACATTTCTCTGGACGTTGGCAAACCTTACCCTCATGAATGTCTTACTGTAAAGAGG TGTATAACGAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAAAGCTGCAGGGCTAGCTTC ATGATCATTCCAAATAGTTGGTTTGATGATTCGGAAAACACCAGGCAGACACCACCTGAT GAAATCTTCAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGGAGAAGTCTGTACCAAGGA AATGATGATTGCCAAAACAATAACACTTCAGTAGACCTCTCTGCTGATTCTGGAGAAGTA GTTTGTGATGAAGTAGTTAAGGACACAGGTACCAGTGATGCAGTCAAGGACATGAGCACC AGTGCTGAAGTAGTCAAGGACATGAGTACCAATGATGAAGTAGTTAAGGCCATGAGCACC AGTGATGAAGTAGTCAAGGACATGAGCACCAGTGATGAAGTAGGCAAGGAGTCGAGTACC AGTGAAGCAGAACAAGAAGTTTGTATGGGTGACATCAGTTGTGTCACAGAGCTGGAACAG AAGACAGCAAAACACCATGAGGACCAACCCGAGGAACATGAGGCAGAGCAGACTGTTAGA GATGAGTGTACAGCAGTTAAAACTGTCAAAGATGTTGGCATAGACGCAGTCCCGAGTACC GCCGAGTCTCCTTCGTGCTGGCCTATTGATTTTGCAAATAGGCAGCGGGAGATCATCGAG TTGTGGCACGACTGCAACGTGTCCCTAGTACACAGGACCTACTTCTTCCTCCTCTTCAAG GGAGATGCTGCAGATAGCGTCTACATGGAAGTGGAGCACAGGAGACTGTCCTTCATCCTC AGCTCGTTCAGCACCAACTCCGCAGGAGGCGAGCTTAACTCCGCAATCGCGTCCAGCTTG AAGAATCTGAAACGTGAGAGGGACATGTTCTACAAGCAGATGCTCAAGAAGCTCGCCAAC GGGGACAAGGAGGGCATCTACACCAGATGGGGGATCGATCTGGGCTCCAAACAGCGGCGG CTTCAGCTATCTCGCCTCGTATGGACGCGGGCTGACATGGAGCATGTCCGGGAGAGCGCC TCGCTGGTGGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGGCTCTCAAGGAGATGTTC AGCCTCAACTTCACACTGGCTCCCAGAACCGAACGGCGGTCTTTCAGCCTGCTACTAGGC GCGTGATCTTTGACGTACGAAGGTAGAAGGGTTTGATTTACCTAGTAAGTACAAGGAGGT TGACTTAACAGGAGAAGAGGACTATGCTGCGTATCATCGATTGGTTTCACGCATGTGTCT CTGCCTTGTTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGTGCGCGTGCGTGTGTGAT ATTTCTGTGTGCAGTCTCACAAAAGTGAATCAATCAGACAGTACAGCTCTCCC