- Transcript HORVU7Hr1G057140.33
- Transcript IDHORVU7Hr1G057140.33
- Gene IDHORVU7Hr1G057140
Barley RTD
Exon Structure of HORVU7Hr1G057140.33
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 244650345 | 244650217 | + |
| chr7H | 2 | 244651074 | 244650741 | + |
| chr7H | 3 | 244651290 | 244651173 | + |
| chr7H | 4 | 244652881 | 244651667 | + |
| chr7H | 5 | 244653452 | 244653145 | + |
| chr7H | 6 | 244654086 | 244653589 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g43400.4 | +3 | 0.0 | 718 | 377/608 (62%) | protein|kinesin motor domain containing protein, expressed |
| TAIR PP10 | AT4G24170 @ ARAPORT AT4G24170.1 @ TAIR |
+2 | 4e-73 | 259 | 131/185 (71%) | Symbols: | ATP binding microtubule motor family protein | chr4:12543206-12546805 FORWARD LENGTH=1004 |
| BRACH PP3 | Bradi3g42190.2.p | +3 | 0.0 | 822 | 422/615 (69%) | pacid=32814335 transcript=Bradi3g42190.2 locus=Bradi3g42190 ID=Bradi3g42190.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2602 bp)
>HORVU7Hr1G057140.33 2602 150831_barley_pseudomolecules ACAGAACTTTGTTGACCTAGCTGGAAGTGAGCGAGCATCTCAGACTGCTTCAGCTGGTAT GAGGTTAAAAGAAGGTAGTCATATTAATCGAAGTCTGCTAACACTGGGAAAGGTTGTTCG CCAACTCAGCAAGGGAAGAAATGGTCATATCCCTTATAGAGATTCAAAGCTGACACGCAT ATTACAGTCCTCTTTGGGAGGCAATGCAAGAACAGCCATTGTCTGCACAATGAGCCCTGC ACACACTCATATTGAGCAATCCAGGAACACACTTCTGTTTGCGACTTGCGCAAAGGAGGT AGTTACAAATGCACAGGTCAATGTAGTGATGTCTGACAAAGCACTACTGAAGCATCTACA GAGAGAGCTCGCAAGATTAGAAAATGAACTGAAATTGCCGGAGTCAGCCTCCTGCACTAG TCATGCTGAAGCTTTAAGAGAGAAGGATGCACAGATTAAAAAGCTGGAAAAACAGCTTAG GGAATTGATAGAAGAAAAGGACACCGTTCAGTCTCAACTTAACTGTTTACTGAGAAGTGA TGGTGACGACCATGACAATGATCGTGCTGCAAAGCGATGGGGATGTCCATAGTCGGTCCT CAGAGTCTCTTGCACGAAATGCATCGGAGGAAGCACTTTCGGTTTCAGACACTTATGGAG GTTCTTATCAAGATCAAGGTCACGCAGTGTTTGATGGATCATATGTCTTCAGTGCTGATC ATGATGGCTTGTCATCCCCCAATAAACCAATGGATCTTCCTCAGCAAACAAGGGTTCGGC AGCCAGTTTCACCTTGGCACCCTACTAGCAACTATAGCTCTGATGGTGCGGAGTCATATA ACATAAAGGAGGTAGCTTTCAGAACTGCATCTGAGGTATCCGAAGAACATTGTAGGGAAG TGCAATGTATAGAGATACATGAGCATAGAAGAAGCACAAGCCAGGAATTTAACGTATTAC TCCATGAGGGCACTAAGCTCCACATACCTGAAGTAGAGGACATCTCTAGAGACGCAGTCC CGCAACCTGATGAAGTGCTAGAAGCAGGGAGCATAACAGAAAAAATGGAAGATCATATGA AGATATACGCTAGCAAAGAGGAGCAGCAGGCCGAGATCATAGCAAATGCAGTAGAAGATC CTATTGAAGTGCATCAATGTGAATCTGATGACTTTGCACACAACTTTGTCAAACTGTACC CATGTGATTCTAACATTTCTCTGGACGTTGGCAAACCTTACCCTCATGAATGTCTTACTG TAAAGAGGTGTATAACGAGCTCCAAGGATAGTGCATTGGCTAGAAGTCAAAGCTGCAGGG CTAGCTTCATGATCATTCCAAATAGTTGGTTTGATGATTCGGAAAACACCAGGCAGACAC CACCTGATGAAATCTTCAGGTATCCTCCCAGAAGGCCTGATAAAGTCAGGAGAAGTCTGT ACCAAGGAAATGATGATTGCCAAAACAATAACACTTCAGTAGACCTCTCTGCTGATTCTG GAGAAGTAGTTTGTGATGAAGTAGTTAAGGACACAGGTACCAGTGATGCAGTCAAGGACA TGAGCACCAGTGCTGAAGTAGTCAAGGACATGAGTACCAATGATGAAGTAGTTAAGGCCA TGAGCACCAGTGATGAAGTAGTCAAGGACATGAGCACCAGTGATGAAGTAGGCAAGGAGT CGAGTACCAGTGAAGCAGAACAAGAAGTTTGTATGGGTGACATCAGTTGTGTCACAGAGC TGGAACAGAAGACAGCAAAACACCATGAGGACCAACCCGAGGAACATGAGGCAGAGCAGA CTGTTAGAGATGAGTGTACAGCAGTTAAAACTGTCAAAGATGTTGGCATAGACGCAGTCC CGAGTACCGCCGAGTCTCCTTCGTGCTGGCCTATTGATTTTGCAAATAGGCAGCGGGAGA TCATCGAGTTGTGGCACGACTGCAACGTGTCCCTAGTACACAGGACCTACTTCTTCCTCC TCTTCAAGGGAGATGCTGCAGATAGCGTCTACATGGAAGTGGAGCACAGGAGACTGTCCT TCATCCTCAGCTCGTTCAGCACCAACTCCGCAGGAGGCGAGCTTAACTCCGCAATCGCGT CCAGCTTGAAGAATCTGAAACGTGAGAGGGACATGTTCTACAAGCAGATGCTCAAGAAGC TCGCCAACGGGGACAAGGAGGGCATCTACACCAGATGGGGGATCGATCTGGGCTCCAAAC AGCGGCGGCTTCAGCTATCTCGCCTCGTATGGACGCGGGCTGACATGGAGCATGTCCGGG AGAGCGCCTCGCTGGTGGCGAGGCTGATCGACCTGGTTGAGCCAGGGCAGGCTCTCAAGG AGATGTTCAGCCTCAACTTCACACTGGCTCCCAGAACCGAACGGCGGTCTTTCAGCCTGC TACTAGGCGCGTGATCTTTGACGTACGAAGGTAGAAGGGTTTGATTTACCTAGTAAGTAC AAGGAGGTTGACTTAACAGGAGAAGAGGACTATGCTGCGTATCATCGATTGGTTTCACGC ATGTGTCTCTGCCTTGTTTTTGCTCGTTGTGTGCGTTTGAAAGAATTGTGTGCGCGTGCG TGTGTGATATTTCTGTGTGCAG